Detailed information NTG1167926

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: ACLIIK_RS00655
• Genome accession: NZ_OZ176236
• Coordinates: 139825..141270 (+)
• Length: 481 a.a.
• NCBI ID: WP_313689482.1
• Uniprot ID: -
• Organism: Achromobacter mucicolens isolate LjRoot1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 134825..146270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLIIK_RS00640	-	135371..136699 (+)	1329	WP_180099774.1	amidase	-
ACLIIK_RS00645	leuA	136936..138645 (-)	1710	WP_062840150.1	2-isopropylmalate synthase	-
ACLIIK_RS00650	-	139164..139826 (-)	663	WP_180099770.1	hypothetical protein	-
ACLIIK_RS00655	rpoN/rpoN1	139825..141270 (+)	1446	WP_313689482.1	RNA polymerase factor sigma-54	Machinery gene
ACLIIK_RS00660	-	141392..141670 (+)	279	WP_056327752.1	bacterioferritin-associated ferredoxin	-
ACLIIK_RS00665	-	141700..142563 (-)	864	WP_410366553.1	LysR substrate-binding domain-containing protein	-
ACLIIK_RS00670	-	142696..143607 (+)	912	WP_410366554.1	DMT family transporter	-
ACLIIK_RS00675	bfr	144013..144489 (+)	477	WP_056327755.1	bacterioferritin	-
ACLIIK_RS00680	-	144579..145253 (-)	675	WP_056327756.1	hypothetical protein	-

Sequence

Protein

• Length: 481 a.a.
• Molecular weight: 52674.03 Da
• Isoelectric Point: 4.7656

>NTDB_id=1167926 ACLIIK_RS00655 WP_313689482.1 139825..141270(+) (rpoN/rpoN1) [Achromobacter mucicolens isolate LjRoot1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLDREDEPATAEDRAESERESSVQDDEP
AAERETAIDEMPGSGGVYPDDDASLPEAARPDTLREHLLGQLALTRAAPRDAALASLLIDELDENGYLGSPLDEILGWLP
AEMEPDMDELRAALSLLQSFDPVGIGARDMAECLQLQLRNPDLTLLPEAADPVVLACARRICAEHLPLLATGNAARLCAA
VGCDETTFRAAHSLILRLEPRPGRAWTVPAAEYAVPDVIVRKTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QAQLQQAKWMIRNVEQRFDTILRVSQAIVERQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTYIRQMVADENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQASV
R

Nucleotide

• Length: 1446 bp

>NTDB_id=1167926 ACLIIK_RS00655 WP_313689482.1 139825..141270(+) (rpoN/rpoN1) [Achromobacter mucicolens isolate LjRoot1]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGGCCTGGCCAGCACCTGACGCTGACCCCACAACTTCA
GCAATCGATCCGATTGTTGCAGTTGTCCACGCTCGACCTTGAAGCGGAAATCTCGCAAGTGCTGGCCGAGAATCCCCTGC
TGGATCGCGAGGACGAGCCGGCGACGGCGGAGGATCGGGCCGAATCCGAGCGCGAATCTTCGGTTCAGGACGACGAACCG
GCGGCCGAGCGCGAGACCGCCATCGACGAGATGCCTGGCTCGGGCGGGGTGTATCCCGACGACGACGCCAGCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAACATCTGCTGGGTCAGCTTGCCCTGACGCGCGCCGCGCCGCGCGATGCCGCGC
TGGCGTCCCTGTTGATCGACGAACTGGACGAAAACGGCTACCTGGGTTCGCCGCTGGACGAAATCCTGGGTTGGCTCCCT
GCCGAAATGGAGCCCGACATGGACGAGCTGCGCGCCGCCCTGTCGCTTCTGCAATCGTTCGACCCGGTGGGCATCGGCGC
GCGCGACATGGCTGAATGCCTGCAACTGCAACTGCGCAATCCCGATCTCACCTTGCTGCCGGAGGCGGCTGACCCCGTCG
TGCTGGCCTGTGCGCGCCGGATCTGCGCCGAGCACCTGCCGCTGTTGGCAACCGGCAACGCCGCGCGCCTGTGTGCGGCC
GTCGGCTGCGACGAGACCACGTTCCGCGCGGCGCATTCGCTGATCTTGCGCCTGGAACCCCGGCCGGGTCGGGCCTGGAC
CGTGCCGGCGGCCGAGTACGCAGTGCCGGACGTCATCGTCCGCAAGACGCGGCGCGGCTGGCAGGCCACGCTGAATAGCG
CCGCGGTGCCGCGGCTGCAGATCAATGGGCTGTACGCGCAGATGCTGGGCAACCAGAAGGAATCCGCCCACGCCGGCCTG
CAGGCCCAGCTGCAGCAGGCCAAATGGATGATCCGCAACGTCGAGCAGCGCTTTGACACGATCCTGCGCGTGTCGCAGGC
CATCGTCGAGCGTCAGACGGCTTTCTTCAGCCAGGGGCCGGCGGCGATGCGTCCGCTCATCCTGAAAGACATCGCCGGCG
AGCTGGGTTTGCATGAATCGACCATTTCCCGGGCCACAACACAGAAGTACATGCTCACTCCATTCGGCACGCTGGAGCTC
AAGCGCTTCTTTGGAACGGGCGTGTCGACAGAAGGCGGCGACGCCACGTCGGCCACCGCCGTGCAGACCTACATCCGCCA
GATGGTGGCCGACGAGAACCGTGCCAAGCCGTTGTCGGATAGCCAGATCATGCAAAAACTGGCCGATCAGGGGATAGTGA
TTGCGCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGGATTGCCCCCGCCGCGCTGCGCAAGGCGCAAGCCTCCGTA
CGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (320-475)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (108-305)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.907	100	0.511