Detailed information NTG1167924

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AB8516_RS16255
• Genome accession: NZ_OZ156465
• Coordinates: 3666107..3667096 (-)
• Length: 329 a.a.
• NCBI ID: WP_369162216.1
• Uniprot ID: -
• Organism: Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3661107..3672096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8516_RS16225	-	3661374..3661832 (-)	459	WP_369162206.1	hypothetical protein	-
AB8516_RS16230	-	3661825..3662259 (-)	435	WP_369162208.1	nuclear transport factor 2 family protein	-
AB8516_RS16235	-	3662281..3662934 (-)	654	WP_369162210.1	HAD hydrolase-like protein	-
AB8516_RS16240	rpoH	3663352..3664197 (-)	846	WP_369162212.1	RNA polymerase sigma factor RpoH	-
AB8516_RS16245	ftsX	3664470..3665414 (-)	945	WP_369162214.1	permease-like cell division protein FtsX	-
AB8516_RS16250	ftsE	3665404..3666087 (-)	684	WP_369163313.1	cell division ATP-binding protein FtsE	-
AB8516_RS16255	pilA	3666107..3667096 (-)	990	WP_369162216.1	signal recognition particle-docking protein FtsY	Machinery gene
AB8516_RS16260	-	3667254..3668618 (+)	1365	WP_369162218.1	M16 family metallopeptidase	-
AB8516_RS16265	-	3668635..3669966 (+)	1332	WP_369162220.1	M16 family metallopeptidase	-
AB8516_RS16270	rsmD	3669991..3670563 (+)	573	WP_369162222.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AB8516_RS16275	coaD	3670626..3671102 (+)	477	WP_108290070.1	pantetheine-phosphate adenylyltransferase	-
AB8516_RS16280	-	3671209..3671463 (+)	255	WP_369162224.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36066.29 Da
• Isoelectric Point: 5.0391

>NTDB_id=1167924 AB8516_RS16255 WP_369162216.1 3666107..3667096(-) (pilA) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
MFGFGKRKKQELQGSTAPPPEEEKRSLFSRLQERLSRTRHNLTDGLANLLLGRKTIDDELLEELETLLLTADVGVEATSR
IINDLTERVDRKELSDPQMLMQLLKQHLREILQACENPVSQRSGDKPLVMMMVGINGAGKTTTIGKLARKFQLDGESVML
AAGDTFRAAAVEQLQTWGERNQIPVIAQHTGADAASVVFDSLQAATSRNIDVLIADTAGRLHTKSNLMEELAKISRVMKK
IDPEAPHEVLLVVDAGTGQNAVNQAMQFNQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIDDLREFDPD
EFVDALFEN

Nucleotide

• Length: 990 bp

>NTDB_id=1167924 AB8516_RS16255 WP_369162216.1 3666107..3667096(-) (pilA) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
ATGTTCGGATTTGGCAAACGCAAGAAGCAGGAACTGCAGGGTAGTACTGCCCCCCCGCCGGAAGAGGAGAAACGCAGTCT
CTTTTCGAGACTGCAGGAGCGCCTCTCACGTACCCGCCATAACCTCACCGATGGACTGGCCAATCTGCTCCTTGGACGGA
AGACCATCGATGATGAGCTGCTGGAGGAACTCGAGACCTTACTCCTCACTGCCGATGTGGGTGTCGAGGCAACCAGCCGT
ATCATTAACGATCTGACGGAACGGGTCGATCGCAAGGAGCTCAGCGATCCGCAAATGCTGATGCAGCTGTTGAAACAGCA
TCTCAGAGAGATTCTTCAGGCATGCGAAAATCCAGTTAGCCAACGCAGCGGTGACAAGCCTCTGGTGATGATGATGGTAG
GCATCAATGGTGCTGGCAAGACCACTACCATTGGAAAGCTGGCACGTAAGTTTCAGTTGGATGGCGAATCCGTCATGCTC
GCCGCCGGTGATACATTCCGCGCCGCCGCAGTGGAACAGCTGCAAACCTGGGGCGAGCGCAATCAGATCCCCGTGATCGC
CCAGCATACGGGTGCCGATGCGGCTTCAGTGGTATTCGATTCATTGCAAGCAGCCACCTCGCGCAATATCGATGTCCTGA
TCGCCGACACTGCGGGACGTCTACATACCAAATCCAACCTCATGGAGGAGTTGGCGAAGATCAGCCGGGTGATGAAGAAA
ATCGATCCGGAGGCCCCCCATGAAGTACTATTGGTGGTGGACGCAGGTACGGGACAGAATGCCGTCAATCAAGCCATGCA
GTTCAACCAGACCGTTGGCTTGACCGGACTGGTGATCACCAAGCTGGACGGCACGGCAAAGGGCGGTGTGGTTTTTGCCA
TCGCCGACAAGGTCAAGGTACCGATCCGTTTCATCGGCGTCGGCGAAGCCATAGACGATTTACGTGAATTCGACCCAGAC
GAATTTGTAGACGCCCTGTTTGAAAACTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (42-108)

• SRP54-type protein, GTPase domain (SRP54) (128-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.597	93.617	0.492