Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB8523_RS03080 Genome accession   NZ_OZ156464
Coordinates   630142..631077 (+) Length   311 a.a.
NCBI ID   WP_369152540.1    Uniprot ID   A0A853F386
Organism   Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625142..636077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8523_RS03065 - 627020..627358 (-) 339 WP_369152533.1 gamma-glutamylcyclotransferase family protein -
  AB8523_RS03070 - 627355..628791 (-) 1437 WP_369152535.1 M16 family metallopeptidase -
  AB8523_RS03075 - 628810..630129 (-) 1320 WP_369152538.1 M16 family metallopeptidase -
  AB8523_RS03080 pilA 630142..631077 (+) 936 WP_369152540.1 signal recognition particle-docking protein FtsY Machinery gene
  AB8523_RS03085 - 631133..631282 (+) 150 WP_369150050.1 hypothetical protein -
  AB8523_RS03090 - 631469..632602 (+) 1134 WP_369152542.1 DNA alkylation repair protein -
  AB8523_RS03095 - 632540..632731 (-) 192 WP_369152543.1 hypothetical protein -
  AB8523_RS03100 - 632822..633448 (-) 627 WP_369152545.1 hypothetical protein -
  AB8523_RS03105 hemC 633462..634376 (-) 915 WP_369152548.1 hydroxymethylbilane synthase -
  AB8523_RS03110 - 634421..634819 (+) 399 WP_369152549.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33969.11 Da        Isoelectric Point: 7.2117

>NTDB_id=1167892 AB8523_RS03080 WP_369152540.1 630142..631077(+) (pilA) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
MFNFFKKDKVEKSTSLKERLVKSRQKLGSGLSSLLLGKKTIDENLLEELEMLLISADIGIKTTEKVLELVRKNATRKILK
NTEELYNFLKNELVKLLIDDNQLNTEQQETFVILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVW
GERNSIAVVAQDTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQGNLMQELAKIKRVITKQNENAPHEVMLVLDGGS
GQNALSQAKEFNKAVELSGISITKLDGTAKGGIVFAISDELNLPIRYIGVGEGINDLKPFSAKEFIEALFD

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1167892 AB8523_RS03080 WP_369152540.1 630142..631077(+) (pilA) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
GTGTTTAATTTTTTCAAAAAAGATAAAGTTGAAAAATCTACCTCTTTAAAAGAGCGTTTAGTTAAATCTCGCCAAAAATT
AGGCTCTGGATTATCAAGCCTATTATTAGGCAAAAAAACCATTGACGAAAACCTACTAGAAGAACTTGAAATGCTGTTAA
TTTCTGCTGATATTGGCATTAAAACCACAGAAAAAGTGCTGGAATTAGTTCGAAAAAATGCAACACGAAAAATCTTGAAA
AATACTGAAGAGTTATATAATTTCTTAAAAAATGAGTTGGTAAAACTGTTAATTGACGACAACCAACTAAACACCGAACA
ACAAGAAACCTTTGTTATTTTAGTCGTCGGTGTGAATGGTGCTGGCAAAACCACCACCATTGGCAAACTTGCCAAGTCGT
TCCAAAATCAAGGCAAGTCGGTAATGTTGGCGGCAGGTGATACCTTTCGTGCCGCAGCAGTTGAACAACTTAAGGTTTGG
GGTGAACGCAACAGTATCGCAGTGGTGGCACAGGATACGGGTGCTGATGCGGCTTCGGTTATCTTCGACGCTTATCAATC
AGCACAAGCCAAAAATATTGACATTCTGATTGCTGACACGGCTGGACGCTTGCACACACAGGGGAATCTTATGCAAGAGT
TAGCCAAAATCAAGCGGGTTATCACCAAACAAAATGAAAACGCACCTCACGAAGTGATGTTGGTGCTTGATGGTGGATCA
GGTCAAAATGCACTCAGCCAAGCCAAGGAATTTAACAAGGCGGTTGAACTCAGTGGTATTAGCATCACCAAACTCGACGG
CACTGCCAAAGGTGGCATCGTCTTTGCCATCTCCGACGAACTCAACCTCCCCATTCGCTATATTGGCGTGGGTGAAGGGA
TTAATGACCTGAAACCTTTTTCAGCAAAAGAGTTTATTGAAGCGTTGTTTGATTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(111-310)

SRP54-type protein, helical bundle domain (SRP54_N)

(27-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853F386

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.492

96.785

0.508

Multiple sequence alignment