Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB8525_RS03110 Genome accession   NZ_OZ156463
Coordinates   595604..596539 (+) Length   311 a.a.
NCBI ID   WP_369178555.1    Uniprot ID   -
Organism   Candidatus Thiodubiliella endoseptemdiera isolate f5363e9f-d249-45d8-8790-cd4b42162838     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590604..601539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8525_RS03095 - 592482..592820 (-) 339 WP_369178549.1 gamma-glutamylcyclotransferase family protein -
  AB8525_RS03100 - 592817..594253 (-) 1437 WP_369178551.1 M16 family metallopeptidase -
  AB8525_RS03105 - 594272..595591 (-) 1320 WP_369178553.1 M16 family metallopeptidase -
  AB8525_RS03110 pilA 595604..596539 (+) 936 WP_369178555.1 signal recognition particle-docking protein FtsY Machinery gene
  AB8525_RS03115 - 596595..596744 (+) 150 WP_369150050.1 hypothetical protein -
  AB8525_RS03120 - 596813..596929 (+) 117 WP_369178557.1 hypothetical protein -
  AB8525_RS03125 - 596931..598064 (+) 1134 WP_369178559.1 DNA alkylation repair protein -
  AB8525_RS03130 - 598002..598193 (-) 192 WP_369152543.1 hypothetical protein -
  AB8525_RS03135 - 598284..598910 (-) 627 WP_369178561.1 hypothetical protein -
  AB8525_RS03140 hemC 598925..599839 (-) 915 WP_369178562.1 hydroxymethylbilane synthase -
  AB8525_RS03145 - 599884..600282 (+) 399 WP_369152549.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34000.12 Da        Isoelectric Point: 6.5275

>NTDB_id=1167882 AB8525_RS03110 WP_369178555.1 595604..596539(+) (pilA) [Candidatus Thiodubiliella endoseptemdiera isolate f5363e9f-d249-45d8-8790-cd4b42162838]
MFNFFKKDKVEKSTSLKERLVKSRQKLGSGLSSLLLGKKTIDENLLEELEMLLISADIGIKTTEKVLELVRKNATRKILK
NTEELYNFLKNELVKLLIDDNQLNTEQQETFVILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVW
GERNSIAVVAQDTGADAASVIFDAYQSAQAKDIDILIADTAGRLHTQGNLMQELAKIKRVITKQNENAPHEVMLVLDGGS
GQNALSQAKEFNKAVELSGISITKLDGTAKGGIVFAISDELNLPIRYISVGEGINDLKPFSAKEFIEALFD

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1167882 AB8525_RS03110 WP_369178555.1 595604..596539(+) (pilA) [Candidatus Thiodubiliella endoseptemdiera isolate f5363e9f-d249-45d8-8790-cd4b42162838]
GTGTTTAATTTTTTCAAAAAAGATAAAGTTGAAAAATCTACCTCTTTAAAAGAGCGTTTAGTTAAATCTCGCCAAAAATT
AGGCTCTGGATTATCAAGCCTATTATTAGGCAAAAAAACCATTGACGAAAACCTACTAGAAGAACTTGAAATGCTGTTAA
TTTCTGCTGATATTGGCATTAAAACCACAGAAAAAGTGCTGGAATTAGTTCGAAAAAATGCAACACGAAAAATACTGAAA
AATACTGAAGAGTTATATAATTTCTTAAAAAATGAGTTGGTAAAACTGTTAATTGACGACAACCAACTAAACACCGAACA
ACAAGAAACCTTTGTTATTTTAGTCGTCGGTGTGAATGGTGCTGGCAAAACCACCACCATTGGCAAACTTGCCAAGTCGT
TCCAAAATCAAGGCAAGTCGGTAATGTTGGCGGCAGGTGATACCTTTCGTGCCGCAGCAGTTGAACAACTTAAGGTTTGG
GGTGAACGCAACAGTATCGCAGTGGTGGCACAGGATACGGGTGCTGATGCGGCTTCGGTTATCTTCGACGCTTATCAATC
AGCACAAGCCAAAGATATTGATATTCTGATTGCTGACACGGCTGGACGCTTGCACACACAGGGGAATCTTATGCAAGAGT
TAGCCAAAATCAAGCGGGTTATCACCAAACAAAATGAAAATGCACCTCATGAAGTGATGCTGGTGCTTGATGGTGGATCA
GGTCAAAATGCACTCAGCCAAGCCAAGGAATTTAACAAGGCGGTTGAACTCAGTGGTATTAGCATCACCAAACTCGACGG
CACTGCCAAAGGTGGCATCGTCTTTGCCATCTCCGACGAACTCAACCTCCCTATTCGCTATATTAGCGTGGGTGAAGGGA
TTAATGACCTGAAACCTTTTTCAGCAAAAGAGTTTATTGAAGCATTGTTTGATTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(111-310)

SRP54-type protein, helical bundle domain (SRP54_N)

(27-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.159

96.785

0.505

Multiple sequence alignment