Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG46_RS20530 Genome accession   NZ_CP010167
Coordinates   3969439..3969954 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain H3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3964439..3974954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG46_RS20505 (RG46_19520) ygaZ 3964838..3965575 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG46_RS20510 (RG46_19525) ygaH 3965565..3965900 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG46_RS20515 (RG46_19530) emrR 3965991..3966521 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG46_RS20520 (RG46_19535) emrA 3966648..3967820 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG46_RS20525 (RG46_19540) emrB 3967837..3969375 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG46_RS20530 (RG46_19545) luxS 3969439..3969954 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  RG46_RS20535 (RG46_19550) gshA 3970104..3971660 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG46_RS20540 (RG46_19555) yqaA 3971733..3972161 (-) 429 WP_001287457.1 YqaA family protein -
  RG46_RS20545 (RG46_19560) yqaB 3972158..3972724 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG46_RS20575 (RG46_19590) csrA 3974317..3974502 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=116782 RG46_RS20530 WP_001130207.1 3969439..3969954(-) (luxS) [Escherichia coli strain H3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=116782 RG46_RS20530 WP_001130207.1 3969439..3969954(-) (luxS) [Escherichia coli strain H3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731