Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI12N_RS14630 Genome accession   NZ_OZ121084
Coordinates   2983272..2983901 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 368_BP0078     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978272..2988901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI12N_RS14615 (KHEC_KMNIHL_14775) helD 2978514..2980568 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACI12N_RS14620 (KHEC_KMNIHL_14780) yccF 2980691..2981137 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACI12N_RS14625 (KHEC_KMNIHL_14785) yccS 2981147..2983309 (+) 2163 WP_000875015.1 YccS family putative transporter -
  ACI12N_RS14630 (KHEC_KMNIHL_14790) sxy/tfoX 2983272..2983901 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI12N_RS14635 (KHEC_KMNIHL_14795) sulA 2984120..2984629 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI12N_RS14640 (KHEC_KMNIHL_14800) ompA 2984986..2986038 (+) 1053 WP_000750419.1 porin OmpA -
  ACI12N_RS14645 (KHEC_KMNIHL_14805) matP 2986113..2986565 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACI12N_RS14650 (KHEC_KMNIHL_14810) ycbZ 2986751..2988511 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1167809 ACI12N_RS14630 WP_000839153.1 2983272..2983901(-) (sxy/tfoX) [Escherichia coli isolate 368_BP0078]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1167809 ACI12N_RS14630 WP_000839153.1 2983272..2983901(-) (sxy/tfoX) [Escherichia coli isolate 368_BP0078]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment