Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACI1L2_RS22190 Genome accession   NZ_OZ121072
Coordinates   4651692..4652321 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli isolate 323_BP0014     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 4646692..4657321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1L2_RS22170 (KHEC_BHPPPN_22380) ycbZ 4647092..4648852 (-) 1761 WP_000156498.1 Lon protease family protein -
  ACI1L2_RS22175 (KHEC_BHPPPN_22385) matP 4649038..4649490 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ACI1L2_RS22180 (KHEC_BHPPPN_22390) ompA 4649568..4650608 (-) 1041 WP_001313715.1 porin OmpA -
  ACI1L2_RS22185 (KHEC_BHPPPN_22395) sulA 4650964..4651473 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  ACI1L2_RS22190 (KHEC_BHPPPN_22400) sxy/tfoX 4651692..4652321 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI1L2_RS22195 (KHEC_BHPPPN_22405) yccS 4652284..4654446 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ACI1L2_RS22200 (KHEC_BHPPPN_22410) yccF 4654456..4654902 (-) 447 WP_001261236.1 YccF domain-containing protein -
  ACI1L2_RS22205 (KHEC_BHPPPN_22415) helD 4655025..4657079 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence


Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=1167748 ACI1L2_RS22190 WP_000839136.1 4651692..4652321(+) (sxy/tfoX) [Escherichia coli isolate 323_BP0014]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1167748 ACI1L2_RS22190 WP_000839136.1 4651692..4652321(+) (sxy/tfoX) [Escherichia coli isolate 323_BP0014]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99


Multiple sequence alignment