Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB2L78_RS10140 Genome accession   NZ_OZ116714
Coordinates   2048858..2050711 (-) Length   617 a.a.
NCBI ID   WP_003537635.1    Uniprot ID   B0N5N8
Organism   Thomasclavelia ramosa strain Marseille-Q9779     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2029889..2055419 2048858..2050711 within 0


Gene organization within MGE regions


Location: 2029889..2055419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2L78_RS10055 - 2029889..2030812 (-) 924 WP_199414837.1 site-specific DNA-methyltransferase -
  AB2L78_RS10060 - 2031076..2031810 (-) 735 WP_270661697.1 ISAs1 family transposase -
  AB2L78_RS10065 - 2031812..2032201 (-) 390 WP_270661696.1 transposase family protein -
  AB2L78_RS10070 - 2032222..2032770 (-) 549 WP_118232580.1 hypothetical protein -
  AB2L78_RS10075 - 2033547..2036534 (-) 2988 WP_303259966.1 SIR2 family protein -
  AB2L78_RS10080 - 2036775..2037257 (-) 483 WP_366254145.1 hypothetical protein -
  AB2L78_RS10085 - 2037451..2038641 (-) 1191 WP_270661624.1 site-specific integrase -
  AB2L78_RS10090 - 2038772..2039980 (+) 1209 WP_270661622.1 site-specific integrase -
  AB2L78_RS10095 guaA 2040036..2041583 (-) 1548 WP_009300257.1 glutamine-hydrolyzing GMP synthase -
  AB2L78_RS10100 - 2041595..2042866 (-) 1272 WP_008791661.1 adenylosuccinate synthase -
  AB2L78_RS10105 - 2043037..2043924 (+) 888 WP_008791660.1 LysR family transcriptional regulator -
  AB2L78_RS10110 - 2043959..2044210 (-) 252 WP_003537653.1 hypothetical protein -
  AB2L78_RS10115 - 2044220..2045290 (-) 1071 WP_009300255.1 molybdopterin-binding protein -
  AB2L78_RS10120 - 2045527..2045682 (-) 156 WP_003537648.1 DUF6323 family protein -
  AB2L78_RS10125 - 2046170..2047009 (-) 840 WP_008791658.1 DUF368 domain-containing protein -
  AB2L78_RS10130 - 2047074..2047448 (-) 375 WP_008791657.1 DUF3795 domain-containing protein -
  AB2L78_RS10135 - 2047458..2048780 (-) 1323 WP_343093340.1 replication-associated recombination protein A -
  AB2L78_RS10140 rcrQ 2048858..2050711 (-) 1854 WP_003537635.1 ABC transporter ATP-binding protein Regulator
  AB2L78_RS10145 - 2050704..2052932 (-) 2229 WP_008791655.1 ABC transporter ATP-binding protein -
  AB2L78_RS10150 - 2052932..2053384 (-) 453 WP_003537632.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB2L78_RS10155 - 2053811..2053933 (-) 123 WP_008791654.1 hypothetical protein -
  AB2L78_RS10160 - 2054102..2054521 (-) 420 WP_008791653.1 C-GCAxxG-C-C family protein -
  AB2L78_RS10165 - 2054613..2055050 (-) 438 WP_288596439.1 hypothetical protein -
  AB2L78_RS10170 - 2055072..2055419 (-) 348 WP_227158434.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67852.03 Da        Isoelectric Point: 5.2739

>NTDB_id=1167681 AB2L78_RS10140 WP_003537635.1 2048858..2050711(-) (rcrQ) [Thomasclavelia ramosa strain Marseille-Q9779]
MSNQPKRNGPKFGPGGMHGMRGGEKAKDFKGTLGKLFKYLRPYYFRLVIVVIFASASTVFAIVGPKILAKATDKLSEGIM
AKVAGTGGIDFDYIGQIILILVGLYLISALFSYIQGFITSTISQRVAYDLRTSISQKMDRMPLSYFDKHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSTVTVIGIFIMMLTISPVMTLIAVCVLPVSMVLIGLVMKRSQKYFARQQAALGDVNGHIEEM
YGGHNVVKAFNGEAASVEQFNEYNDNLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGVLAGGGSITIGDIQAFIQY
VRQFNQPITQLAQTMNMLQSTAAAAERVFEFLGEEELEPETPKVTADEVAKVEGSVTFADVNFGYLKDQTIINDFSLHVH
AGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSILIDGKDIRDFGRQDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDE
EVKEACKVAYVDHFVQTLENGYETMINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHDSLLAKDGFYASLYRSQFEGSDE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=1167681 AB2L78_RS10140 WP_003537635.1 2048858..2050711(-) (rcrQ) [Thomasclavelia ramosa strain Marseille-Q9779]
ATGAGTAATCAACCAAAAAGAAATGGTCCTAAATTCGGACCTGGTGGTATGCACGGAATGCGTGGCGGTGAAAAAGCTAA
AGATTTTAAAGGTACTTTAGGTAAATTATTTAAATATTTAAGACCGTATTATTTTCGTTTAGTTATAGTTGTGATTTTTG
CTTCAGCATCAACGGTTTTTGCAATCGTAGGACCAAAGATTTTAGCTAAAGCAACAGATAAATTAAGTGAAGGTATCATG
GCTAAAGTAGCTGGTACTGGTGGAATTGATTTTGATTATATTGGTCAAATTATTTTGATTTTAGTTGGATTGTATTTGAT
TAGTGCTTTATTTAGTTATATACAAGGTTTTATTACTTCAACTATTTCACAACGAGTTGCTTATGATTTAAGAACATCAA
TTTCTCAAAAGATGGATCGGATGCCATTAAGTTATTTTGATAAACATACTAGTGGTGATATTTTAAGCCGAGTAACAAAT
GATATCGATACAATCGCACAATCACTAAATCAAAGTATGTCACAGGTAATTACGTCGACAGTAACGGTAATTGGAATCTT
TATCATGATGTTGACTATTTCACCAGTTATGACTTTGATCGCAGTTTGCGTATTACCAGTATCAATGGTTTTGATTGGTT
TAGTAATGAAACGTTCACAAAAATATTTTGCGCGTCAACAAGCTGCTTTAGGTGATGTCAATGGTCATATTGAAGAAATG
TATGGTGGTCATAATGTGGTTAAAGCATTTAATGGTGAAGCTGCTTCAGTAGAACAATTTAATGAGTATAATGATAATTT
ATATGAAAGTGCTTGGAAGTCACAATTCTTTTCGGGTTTGATGCAGCCAATCACAGGATTTGTTGGAAATGTTGGATACG
TTGCGGTATGTTTATTAGGTGGTGTTCTTGCTGGTGGTGGTAGTATCACAATTGGTGATATTCAGGCCTTTATTCAATAT
GTAAGACAATTTAATCAACCAATAACACAATTAGCACAGACAATGAATATGTTACAAAGTACAGCAGCAGCGGCTGAACG
TGTTTTTGAATTTTTAGGTGAAGAAGAATTAGAACCAGAAACACCAAAAGTTACTGCTGATGAGGTGGCTAAAGTTGAAG
GTTCTGTTACCTTTGCTGATGTTAATTTTGGGTATTTAAAAGATCAAACGATTATTAATGATTTTAGTTTACATGTTCAT
GCGGGGCAAACTGTTGCAATTGTAGGACCGACTGGTGCTGGAAAAACAACGATCGTAAAATTATTAATGCGATTCTATGA
ATTAAATAGTGGTTCGATTCTTATTGATGGTAAAGATATTCGTGATTTTGGACGTCAGGATTTACGATCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTGTTTAATGGAACAATTAAGGAAAACCTAATGTATGGAAAATTAGATGCAAGTGATGAA
GAAGTCAAGGAGGCTTGTAAAGTCGCTTATGTTGATCATTTTGTACAAACATTAGAGAATGGATATGAAACAATGATCAA
TGAGGAATCATCTAACATTTCTCAAGGGCAAAAACAACTTTTAACAATTGCACGTGCTTTCTTAAAAGATCCAAAAATTT
TGATTCTTGATGAAGCAACTTCTTCAGTAGATACAAGAACAGAAGTATTAATTCAAAAAGGAATGGAAAAGCTAATGGAG
GGAAGAACAAGTTTTGTCATTGCCCATCGTTTATCAACAATTCGTGATGCTGACACAATTATTGTAATGAAAGATGGTGA
CATTGTAGAACTTGGAAATCATGATTCATTATTGGCTAAAGATGGCTTCTATGCCTCATTGTATCGTTCTCAATTCGAGG
GATCAGATGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.489

0.494

Multiple sequence alignment