Detailed information NTG0116743

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AW02_RS18005
• Genome accession: NZ_CP007165
• Coordinates: 3719343..3720488 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus velezensis NJN-6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3714343..3725488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AW02_RS17985 (AW02_035600)	-	3714818..3715534 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
AW02_RS17990 (AW02_035610)	narK	3715632..3716822 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
AW02_RS17995 (AW02_035620)	argS	3716956..3718626 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
AW02_RS18000 (AW02_035630)	-	3718623..3719051 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
AW02_RS18005 (AW02_035640)	rapF	3719343..3720488 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
AW02_RS20575 (AW02_035650)	-	3720472..3720591 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
AW02_RS18010 (AW02_035660)	speB	3720714..3721151 (-)	438	Protein_3595	agmatinase	-
AW02_RS18015 (AW02_035670)	-	3721313..3722740 (-)	1428	WP_046341451.1	DUF885 family protein	-
AW02_RS18020 (AW02_035680)	-	3722741..3724081 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
AW02_RS18025 (AW02_035690)	-	3724078..3725133 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=116743 AW02_RS18005 WP_024085922.1 3719343..3720488(+) (rapF) [Bacillus velezensis NJN-6]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=116743 AW02_RS18005 WP_024085922.1 3719343..3720488(+) (rapF) [Bacillus velezensis NJN-6]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533