Detailed information NTG0116682

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: AW02_RS01905
• Genome accession: NZ_CP007165
• Coordinates: 413922..415070 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis NJN-6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 408922..420070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AW02_RS01885 (AW02_003400)	-	409319..410002 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
AW02_RS01890 (AW02_003410)	-	410017..411453 (-)	1437	WP_024084884.1	ABC transporter permease	-
AW02_RS01895 (AW02_003420)	-	411666..412349 (+)	684	WP_024084885.1	response regulator transcription factor	-
AW02_RS01900 (AW02_003430)	-	412336..413769 (+)	1434	WP_161625271.1	sensor histidine kinase	-
AW02_RS01905 (AW02_003440)	rapC	413922..415070 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
AW02_RS01910 (AW02_003450)	phrC	415054..415173 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
AW02_RS19910	-	415323..415433 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
AW02_RS01915 (AW02_003460)	-	415513..416877 (-)	1365	WP_003156333.1	aspartate kinase	-
AW02_RS01920 (AW02_003470)	ceuB	417292..418245 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
AW02_RS01925 (AW02_003480)	-	418235..419182 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
AW02_RS01930 (AW02_003490)	-	419176..419934 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=116682 AW02_RS01905 WP_003156336.1 413922..415070(+) (rapC) [Bacillus velezensis NJN-6]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=116682 AW02_RS01905 WP_003156336.1 413922..415070(+) (rapC) [Bacillus velezensis NJN-6]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568