Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AB5Y62_RS21210 Genome accession   NZ_OZ078861
Coordinates   1038695..1039789 (-) Length   364 a.a.
NCBI ID   WP_004730058.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033695..1044789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS21190 - 1034415..1034723 (+) 309 WP_017079638.1 DUF1289 domain-containing protein -
  AB5Y62_RS21195 - 1034859..1035209 (-) 351 WP_017082477.1 HopJ type III effector protein -
  AB5Y62_RS21200 - 1035404..1036063 (+) 660 WP_368085304.1 PilZ domain-containing protein -
  AB5Y62_RS21205 luxQ 1036125..1038695 (-) 2571 WP_368085305.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AB5Y62_RS21210 luxP 1038695..1039789 (-) 1095 WP_004730058.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AB5Y62_RS21215 - 1040098..1040412 (-) 315 WP_017093084.1 GIY-YIG nuclease family protein -
  AB5Y62_RS21220 - 1040413..1041069 (-) 657 WP_017088654.1 YceH family protein -
  AB5Y62_RS21225 - 1041133..1041333 (-) 201 WP_004730052.1 hypothetical protein -
  AB5Y62_RS21230 - 1041529..1041843 (+) 315 WP_004730049.1 DUF496 family protein -
  AB5Y62_RS21235 - 1042042..1042668 (+) 627 WP_004730047.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  AB5Y62_RS21240 - 1042833..1043069 (+) 237 WP_004730045.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41127.32 Da        Isoelectric Point: 5.2924

>NTDB_id=1166610 AB5Y62_RS21210 WP_004730058.1 1038695..1039789(-) (luxP) [Vibrio splendidus isolate A06]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSKFPEQKALTDKMVEAVQNHPVPLRRAQNEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLTQTSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLANYFKEVSKPDSKYSVLYRSEGYISDARGDTFIHDVNTDTNFDLKSSFYTKSD
KESGYQAAKISIANDKDLDFIYACATDVALGAAEAIRESGRDILVNGWGGGSAELEAIAKGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEVVTKDDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=1166610 AB5Y62_RS21210 WP_004730058.1 1038695..1039789(-) (luxP) [Vibrio splendidus isolate A06]
ATGAAACGTTTACTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACTCATGTCCTCAATGG
GTACTGGGAATACCAAGATTATCTTTCCAAGTTTCCAGAGCAAAAAGCACTGACCGATAAAATGGTCGAAGCTGTGCAAA
ATCACCCTGTGCCATTGAGACGAGCTCAGAATGAGCCTATTACGATCTCAGTGGTGTATCCGGGTCAACAGATCTCCGAC
TACTGGGTTCGTAACATTCAAGCTTTTGAGAAACGCCTCGATAAGTTGAGAATTAACTATCAAATAAATCAGGTGTTTAC
CCGGGTTAATGCCGATCTCACGCAAACAAGCATTTCATTGCAAGAAGCGATAGAGAACAAAACGGATTACTTGATTTTTA
CATTAGACACGACGCGCCACCGCAAGTTTATTGAGCACGTGTTGAGCTCTACTGACACCAAACTCATTCTGCAAAATATC
ACAACACCAGTGCGTGCTTGGGCTGATAGACAGCCGTTCATGTATGTGGGGTTTGATCATGCGACAGGCAGTTTAAAATT
GGCGAATTACTTTAAAGAAGTGAGCAAACCAGACAGCAAATATTCTGTGTTATATCGCTCAGAGGGCTACATCAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAACACCGATACGAACTTTGATCTTAAGTCTTCATTTTACACGAAATCAGAC
AAAGAGAGTGGTTACCAAGCGGCTAAAATCAGCATTGCGAACGATAAGGACCTAGACTTTATCTATGCATGTGCAACCGA
TGTCGCTCTGGGCGCTGCGGAAGCCATTCGTGAATCTGGTCGAGATATCTTAGTTAATGGCTGGGGAGGCGGATCCGCTG
AACTGGAAGCCATTGCAAAGGGCGATTTAGATGTCACAGTCATGCGTATGAATGACGATACCGGTATTGCTATGGCAGAG
GCGATCAAGTGGGACCTAGCCGGATTGGAAGTTCCTACGGTTTACTCTGGTGAGTTTGAAGTTGTGACCAAAGATGATTC
ACCAGAACGTATTTCAGAACTTAAGCAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.934

100

0.643

Multiple sequence alignment