Detailed information NTG1166592

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: AB5Y62_RS07095
• Genome accession: NZ_OZ078860
• Coordinates: 1552382..1553806 (-)
• Length: 474 a.a.
• NCBI ID: WP_102453508.1
• Uniprot ID: -
• Organism: Vibrio splendidus isolate A06
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1547382..1558806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5Y62_RS07070	-	1547933..1548586 (+)	654	WP_368084349.1	thiopurine S-methyltransferase	-
AB5Y62_RS07075	purT	1548717..1549892 (-)	1176	WP_017077980.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
AB5Y62_RS07080	cdd	1550060..1550947 (-)	888	WP_004734864.1	cytidine deaminase	-
AB5Y62_RS07085	-	1551305..1551982 (-)	678	WP_004734865.1	LrgB family protein	-
AB5Y62_RS07090	-	1551985..1552356 (-)	372	WP_004734867.1	CidA/LrgA family protein	-
AB5Y62_RS07095	sbcB	1552382..1553806 (-)	1425	WP_102453508.1	exodeoxyribonuclease I	Machinery gene
AB5Y62_RS07100	-	1554829..1555263 (+)	435	WP_004734871.1	DUF4402 domain-containing protein	-
AB5Y62_RS07105	-	1555316..1555753 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
AB5Y62_RS07110	-	1555750..1556460 (+)	711	WP_017090896.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54672.97 Da
• Isoelectric Point: 4.8683

>NTDB_id=1166592 AB5Y62_RS07095 WP_102453508.1 1552382..1553806(-) (sbcB) [Vibrio splendidus isolate A06]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDSFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1166592 AB5Y62_RS07095 WP_102453508.1 1552382..1553806(-) (sbcB) [Vibrio splendidus isolate A06]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGTAACTCACGTTGGG
ATCTGTTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCAGCACAACCTAAAATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCTGAA
ACCATCGGTATTGACCGCCAACAATGCTTGAAGAACTTAGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACAGTTTCTTTTCACCTG
CAGATAAAACAGCGATGAACATCATCCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGAATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAGTGGGC
GAACCATTGTCGTGAGTTTTATGAGTGCCGTTTAGAAGAATACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764