Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AB5Y62_RS06985 Genome accession   NZ_OZ078860
Coordinates   1532049..1533230 (-) Length   393 a.a.
NCBI ID   WP_368084341.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527049..1538230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS06970 - 1527902..1528477 (+) 576 WP_368084338.1 hypothetical protein -
  AB5Y62_RS06975 - 1528726..1529541 (+) 816 WP_368084339.1 TauD/TfdA dioxygenase family protein -
  AB5Y62_RS06980 - 1529797..1531845 (+) 2049 WP_368084340.1 response regulator -
  AB5Y62_RS06985 cqsA 1532049..1533230 (-) 1182 WP_368084341.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB5Y62_RS06990 - 1533589..1534971 (-) 1383 WP_368084342.1 PLP-dependent aminotransferase family protein -
  AB5Y62_RS06995 - 1535075..1535971 (+) 897 WP_029224532.1 EamA family transporter -
  AB5Y62_RS07000 - 1536160..1537170 (-) 1011 WP_368084343.1 GTP-binding protein -
  AB5Y62_RS07005 - 1537160..1537720 (-) 561 WP_102449846.1 carbonate dehydratase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43692.82 Da        Isoelectric Point: 6.4463

>NTDB_id=1166591 AB5Y62_RS06985 WP_368084341.1 1532049..1533230(-) (cqsA) [Vibrio splendidus isolate A06]
MSDKTKTKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDVQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPSTPVYIDFFAHMSLWEGIRAASALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1166591 AB5Y62_RS06985 WP_368084341.1 1532049..1533230(-) (cqsA) [Vibrio splendidus isolate A06]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAGCATTTGGTATTGGGTAAACGTCCACCACGCAACGCTGTTGTCATGCAGAGCAATGATTACC
TAGCGCTGTCACACAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCT
GCAATTTTCTTACAAGATGTGCAGTCTAAACCTGCGTTCGAAACTGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCTGCTAATATTGGGCTATTGCAAACCATCTGCCCACCGAGCACACCGGTGTACATTGACT
TCTTTGCACACATGTCGCTTTGGGAAGGCATTCGCGCTGCAAGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGACTCGGTTTACAGCACAATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGTGAAAATGGAGCTGGCTTAGTTCACGCATTGGGTCTCACTAATCAAGTCGACTTCATTACCGTCAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCAATTCTTGGGCCGAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGCGCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTTACTACCGGTCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATCGTGGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGTGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCGGTCAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAGTTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment