Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB5Y62_RS01145 Genome accession   NZ_OZ078860
Coordinates   249287..250291 (-) Length   334 a.a.
NCBI ID   WP_004729690.1    Uniprot ID   A0A7W4CDV7
Organism   Vibrio splendidus isolate A06     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 244287..255291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS01115 zapB 244435..244677 (+) 243 WP_004729696.1 cell division protein ZapB -
  AB5Y62_RS01120 rraA 244790..245308 (-) 519 WP_004729695.1 ribonuclease E activity regulator RraA -
  AB5Y62_RS01125 - 245382..246299 (-) 918 WP_017080187.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AB5Y62_RS01130 hslU 246455..247795 (-) 1341 WP_017077598.1 HslU--HslV peptidase ATPase subunit -
  AB5Y62_RS01135 hslV 247854..248402 (-) 549 WP_368084054.1 ATP-dependent protease subunit HslV -
  AB5Y62_RS01140 ftsN 248625..249164 (-) 540 WP_029406236.1 cell division protein FtsN -
  AB5Y62_RS01145 cytR 249287..250291 (-) 1005 WP_004729690.1 DNA-binding transcriptional regulator CytR Regulator
  AB5Y62_RS01150 priA 250532..252733 (-) 2202 WP_368084055.1 primosomal protein N' -
  AB5Y62_RS01155 rpmE 253066..253284 (+) 219 WP_004729688.1 50S ribosomal protein L31 -
  AB5Y62_RS01160 - 253617..254906 (+) 1290 WP_004729687.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36557.09 Da        Isoelectric Point: 6.4911

>NTDB_id=1166566 AB5Y62_RS01145 WP_004729690.1 249287..250291(-) (cytR) [Vibrio splendidus isolate A06]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1166566 AB5Y62_RS01145 WP_004729690.1 249287..250291(-) (cytR) [Vibrio splendidus isolate A06]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCGACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGTCAACAAAAGAAGCGTGAGTCTTCATT
TGTTAACTTGGTCTTCACAAAACAAGCAGACGGTATGCTACTGCTTGGCACTGATCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGACCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTTGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGCTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CDV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877

Multiple sequence alignment