Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   X953_RS09795 Genome accession   NZ_CP007161
Coordinates   1887922..1889634 (+) Length   570 a.a.
NCBI ID   WP_040955399.1    Uniprot ID   A0A075JP54
Organism   Virgibacillus sp. SK37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882922..1894634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X953_RS09770 (X953_10360) - 1884171..1884404 (+) 234 WP_040955394.1 exodeoxyribonuclease VII small subunit -
  X953_RS09775 (X953_10365) - 1884405..1885277 (+) 873 WP_040955395.1 polyprenyl synthetase family protein -
  X953_RS09780 (X953_10370) - 1885972..1886556 (+) 585 WP_040955396.1 hypothetical protein -
  X953_RS09785 (X953_10375) - 1886571..1887404 (+) 834 WP_040955397.1 TlyA family RNA methyltransferase -
  X953_RS09790 (X953_10380) ahrC 1887443..1887892 (+) 450 WP_040955398.1 transcriptional regulator AhrC/ArgR -
  X953_RS09795 (X953_10385) recN 1887922..1889634 (+) 1713 WP_040955399.1 DNA repair protein RecN Machinery gene
  X953_RS09800 (X953_10390) spoIVB 1889867..1891153 (+) 1287 WP_040955400.1 SpoIVB peptidase -
  X953_RS09805 (X953_10395) spo0A 1891415..1892194 (+) 780 WP_040955401.1 sporulation transcription factor Spo0A -
  X953_RS09810 (X953_10400) - 1892304..1893650 (-) 1347 WP_040955402.1 aspartate kinase -
  X953_RS09815 (X953_10405) - 1893812..1894042 (-) 231 WP_040955403.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 64805.49 Da        Isoelectric Point: 5.3627

>NTDB_id=116654 X953_RS09795 WP_040955399.1 1887922..1889634(+) (recN) [Virgibacillus sp. SK37]
MLTELSIHDFAIIEDISITFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGTKKAEIEGLFIIDSDTHPIYEV
GNEYGIEISDKQIVLQRSITANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMNPEHHIDLLDMYDAGQIRKTK
QEYHKLFGKLLSLKNRYKKLSENEQEMAHRLDLLQFQLKEIEEADLSPDEDQNLEEERASLVNYERIFQALQDGYNALYG
EQKGLEWVNKAQVALQSAATYDKFIEEKAEAISNHYYALEELTYELRNYTEMQQYSPGRLNELEGRLNEISRLKKKYGAT
VNDILEYMAKVEEEIEEITNKDSHLSKLNEEIKEIQKDAYLEARQLHDLRKKAANSLTTNIHKELKGLYLEKASFAISFG
EGDGFKNEEELPLHKNGFDHVRFLISTNTGEPLKELNKIASGGELSRIMLVLKKIFSRHQGVTSVIFDEVDTGVSGRVAQ
AIAEKIYQISQASQVLCITHLPQVAAMADTHKFIKKLEKNQRTFTSVSELTKEQQIDELSRMITGTKLTETAKEHGKEML
ELAYQYKASL

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=116654 X953_RS09795 WP_040955399.1 1887922..1889634(+) (recN) [Virgibacillus sp. SK37]
GTGCTAACAGAATTATCTATACATGACTTCGCGATTATTGAGGATATATCTATAACATTCAATGAAGGATTGACAGTGCT
AACAGGTGAAACTGGTGCAGGGAAATCCATAATTATTGATGCAGTGCAATTATTGGCTGGTGGCAGGGGATCAGTCGAAT
TTGTAAGACATGGAACAAAGAAAGCGGAGATTGAAGGTTTATTCATAATTGACTCTGATACCCATCCCATTTATGAAGTT
GGAAACGAATATGGTATTGAAATATCTGACAAGCAGATTGTACTTCAACGTTCCATTACGGCCAATGGAAAAAGTATATG
CAGGGTAAATAGTAAATTAGTTACACTTGCAATATTGAGGGAGTTTGGAAAGACACTAATTGATATTCACAGTCAGCATG
AAACACAGTCTCTTATGAACCCTGAACATCATATCGACTTACTCGATATGTATGATGCAGGTCAAATTAGAAAAACAAAA
CAGGAGTATCATAAACTGTTTGGTAAACTTTTATCCCTGAAAAATCGCTATAAAAAATTAAGTGAAAATGAACAGGAAAT
GGCTCACCGACTAGATCTTCTTCAATTTCAGCTTAAGGAAATTGAAGAAGCTGATCTATCACCTGATGAAGATCAGAACT
TAGAGGAAGAAAGAGCTTCCTTGGTTAATTATGAACGTATTTTCCAAGCGTTGCAAGATGGATACAATGCTTTGTACGGG
GAACAGAAAGGGTTGGAATGGGTTAATAAAGCTCAGGTGGCACTCCAATCTGCTGCTACATATGATAAATTTATTGAAGA
AAAAGCAGAAGCAATCTCCAACCATTATTATGCTTTAGAAGAATTGACATATGAACTACGGAATTATACAGAAATGCAGC
AATACTCTCCTGGCAGATTGAATGAACTTGAGGGTAGATTAAACGAAATCAGCCGTTTGAAAAAGAAATATGGTGCTACA
GTGAATGATATTCTGGAATATATGGCAAAAGTAGAAGAGGAAATTGAAGAAATCACTAACAAAGATTCTCACTTATCTAA
GCTTAATGAAGAAATAAAAGAAATACAAAAAGATGCATATTTGGAAGCAAGACAACTACATGATTTACGTAAAAAGGCAG
CAAATTCCCTAACAACTAATATTCACAAAGAATTAAAAGGATTGTATTTAGAAAAAGCGTCCTTTGCAATTTCATTTGGA
GAAGGTGATGGTTTTAAAAACGAAGAAGAACTTCCACTTCATAAAAATGGTTTTGATCACGTACGCTTTTTAATTTCAAC
GAATACAGGGGAACCTCTTAAAGAATTGAACAAAATCGCTTCCGGTGGTGAGCTTTCCAGGATAATGCTCGTTCTTAAGA
AGATCTTTTCCAGGCATCAAGGTGTTACAAGTGTTATTTTTGATGAAGTAGACACAGGAGTTAGCGGTAGGGTTGCACAG
GCTATTGCTGAAAAAATATATCAAATTTCACAAGCTTCGCAAGTACTGTGTATTACACACTTACCTCAGGTAGCAGCAAT
GGCAGATACCCACAAATTTATCAAAAAGCTGGAAAAAAACCAACGCACGTTTACATCAGTATCCGAGCTAACAAAAGAGC
AGCAAATTGATGAACTAAGCAGAATGATTACGGGTACTAAATTAACCGAGACTGCTAAAGAACATGGAAAAGAAATGCTT
GAATTAGCGTATCAGTATAAAGCATCATTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(5-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JP54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.646

100

0.542

Multiple sequence alignment