Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3222_RS06845 Genome accession   NZ_OZ064360
Coordinates   1354870..1356657 (-) Length   595 a.a.
NCBI ID   WP_150280757.1    Uniprot ID   -
Organism   Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349870..1361657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3222_RS06815 - 1349998..1350381 (-) 384 WP_014974767.1 VOC family protein -
  AB3222_RS06820 - 1350455..1351183 (-) 729 WP_367301052.1 fructose permease -
  AB3222_RS06825 - 1351188..1352204 (-) 1017 WP_014974769.1 zinc-dependent alcohol dehydrogenase family protein -
  AB3222_RS06830 - 1352387..1353355 (+) 969 WP_014974770.1 LacI family DNA-binding transcriptional regulator -
  AB3222_RS06835 - 1353424..1354341 (-) 918 WP_014974771.1 phosphoglycerate dehydrogenase -
  AB3222_RS06840 - 1354394..1354795 (-) 402 WP_014974772.1 cytidine deaminase -
  AB3222_RS06845 pepF 1354870..1356657 (-) 1788 WP_150280757.1 oligoendopeptidase F Regulator
  AB3222_RS06850 - 1356728..1357759 (-) 1032 WP_014974774.1 competence protein CoiA -
  AB3222_RS06855 - 1357808..1359241 (-) 1434 WP_150280758.1 ABC transporter substrate-binding protein/permease -
  AB3222_RS06860 - 1359350..1360102 (-) 753 WP_150280759.1 amino acid ABC transporter ATP-binding protein -
  AB3222_RS06865 - 1360099..1361541 (-) 1443 WP_135197734.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67772.58 Da        Isoelectric Point: 4.6041

>NTDB_id=1166489 AB3222_RS06845 WP_150280757.1 1354870..1356657(-) (pepF) [Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA]
MAQPLRNEVPKSLTWDLTTIFSTDEAWQAAFEKIQNDTQKVRQFAGHVGDSAETVQAALEANLALERQLESVHVYANQIY
DQDTTNQKYAAFYARVQGLWATVSEATAYFQPEVLNIPDADLATYLTTDGLKKYAHLFETLKAQKPYTLPADQEALLAGA
SDIFNASENTFGALDNSDIIFGDVHTESGEIVPLTNGLYSLLLESKNRALRQEAFETLYDSYIALQNTFASTLSSHVKGH
NFLARTRHYQSAREAAILPHQVPTTVFQTLIKTVDEHLPLLHRFVSLRKKILNVEDVHSYDLYVPLVDEIDFEVTYEKAK
DIVLAALAPLGEDYLAIVQKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSIHSYLTRH
NQPYYYGDYPIFLAEIASTTNESLLTDYLLKNNDDPKFQAYILNQYLDGFKGTVFRQTQFAEFENWIHEQSAQGEALTAD
KMSTYYGNLNQKYYGNDLFPDEEITFEWSRIPHFYYNFYVYQYATGEAAATTLAERILNQNGAEAYKNYLKAGSSDYPLN
VIAKAGVDMSQADYLNQAFDVFEERLNQLEMLLKK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1166489 AB3222_RS06845 WP_150280757.1 1354870..1356657(-) (pepF) [Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA]
ATGGCACAACCATTACGTAATGAAGTACCGAAATCTCTGACATGGGATCTCACAACGATTTTTTCGACCGACGAAGCTTG
GCAAGCAGCTTTTGAAAAAATACAAAATGATACTCAGAAAGTTCGCCAATTTGCTGGACATGTTGGTGATTCAGCAGAAA
CAGTACAAGCAGCTTTAGAAGCGAATCTAGCATTAGAACGTCAACTCGAGAGCGTACATGTTTATGCCAATCAAATTTAT
GACCAAGATACGACTAATCAAAAGTATGCGGCTTTTTATGCCCGTGTACAAGGATTATGGGCGACGGTCAGTGAAGCAAC
AGCGTATTTTCAACCAGAAGTGTTGAATATTCCTGATGCGGATTTGGCAACATATTTAACGACCGACGGCTTAAAAAAGT
ATGCACATTTATTTGAGACACTAAAAGCACAAAAGCCATACACATTACCGGCAGATCAAGAAGCACTTCTAGCAGGTGCG
AGTGACATTTTTAATGCTTCTGAAAATACGTTTGGTGCATTGGATAATTCTGATATAATATTTGGCGATGTTCACACTGA
ATCAGGGGAAATTGTACCACTAACTAATGGTTTGTACAGTTTATTATTGGAATCAAAGAATCGAGCTCTGCGACAAGAGG
CTTTTGAAACATTGTATGATAGCTATATAGCCTTACAAAACACATTCGCTTCAACGCTTTCATCACACGTTAAGGGACAT
AACTTTTTAGCTCGAACGCGCCATTACCAATCAGCGCGTGAAGCAGCTATTTTACCACATCAGGTGCCAACAACTGTTTT
TCAAACATTAATTAAGACAGTGGATGAACATTTACCGTTATTACATCGTTTTGTATCTTTACGTAAAAAGATTTTAAATG
TTGAAGATGTACATTCTTATGATTTATATGTACCATTAGTAGATGAAATAGATTTTGAAGTGACATACGAAAAAGCAAAA
GATATTGTTCTGGCAGCGTTAGCGCCATTGGGTGAAGATTATCTAGCCATTGTTCAAAAAGCTTTTGATGAACGATGGAT
TGATGTTGTTGAAAACAAAGGTAAACGGACGGGAGCCTATTCGAGTGGCACATATGATACGAATCCCTTTATTTTATTGA
ACTGGCAAAATAATCTGAATAATGTTTACACATTAGCTCATGAAATGGGCCATTCTATTCATTCTTATTTAACGCGACAT
AATCAACCTTATTACTATGGCGACTATCCAATTTTCTTAGCTGAAATTGCGTCAACAACCAATGAGTCATTACTCACAGA
CTACTTATTGAAAAATAATGATGATCCAAAGTTTCAAGCATATATCCTCAATCAATATTTGGACGGCTTTAAGGGAACGG
TATTTCGTCAAACACAGTTTGCGGAGTTTGAGAATTGGATTCACGAACAAAGTGCTCAGGGTGAAGCTTTAACTGCTGAT
AAAATGAGTACTTATTATGGCAATCTTAATCAGAAGTATTACGGCAATGATTTATTCCCTGATGAAGAAATCACGTTTGA
ATGGTCGCGCATCCCGCATTTTTATTACAATTTCTATGTTTATCAATATGCCACTGGTGAGGCTGCAGCAACGACTTTAG
CTGAACGTATTCTAAATCAAAATGGTGCAGAAGCTTACAAAAACTATTTGAAAGCCGGTTCATCAGATTATCCTTTGAAT
GTGATTGCGAAAGCCGGTGTTGATATGAGCCAAGCTGATTACTTAAATCAAGCTTTTGATGTATTTGAAGAACGCTTAAA
CCAGTTAGAAATGTTATTAAAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.277

99.664

0.521

Multiple sequence alignment