Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   X953_RS05260 Genome accession   NZ_CP007161
Coordinates   1049388..1051202 (+) Length   604 a.a.
NCBI ID   WP_040954662.1    Uniprot ID   A0A075JN72
Organism   Virgibacillus sp. SK37     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044388..1056202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X953_RS05240 (X953_05565) - 1044872..1045465 (+) 594 WP_040954661.1 GNAT family N-acetyltransferase -
  X953_RS05245 (X953_05570) spxA 1045901..1046296 (+) 396 WP_019378978.1 transcriptional regulator SpxA -
  X953_RS05250 (X953_05575) mecA 1046746..1047441 (+) 696 WP_040956971.1 adaptor protein MecA -
  X953_RS19015 (X953_05580) - 1048089..1049279 (+) 1191 WP_052350043.1 competence protein CoiA -
  X953_RS05260 (X953_05585) pepF 1049388..1051202 (+) 1815 WP_040954662.1 oligoendopeptidase F Regulator
  X953_RS05265 (X953_05590) - 1051916..1052809 (-) 894 WP_040954663.1 ClpXP adapter SpxH family protein -
  X953_RS05270 (X953_05595) - 1052827..1053207 (-) 381 WP_040954664.1 globin -
  X953_RS05275 (X953_05600) - 1053356..1053922 (-) 567 WP_040954665.1 CYTH domain-containing protein -
  X953_RS05280 (X953_05605) - 1054222..1054830 (+) 609 WP_040954666.1 GTP pyrophosphokinase family protein -
  X953_RS05285 (X953_05610) - 1054867..1055670 (+) 804 WP_040954667.1 NAD kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69839.58 Da        Isoelectric Point: 4.7233

>NTDB_id=116645 X953_RS05260 WP_040954662.1 1049388..1051202(+) (pepF) [Virgibacillus sp. SK37]
MANSKTKALPKREELPKERTWKLEAIFDTDELWEKELKQLQTDIPKIEKYQGKLAESSDQLLGVLKLQDELSERLGKLYT
YAHMRYDQDTTNSWYQGLNAQAENVLTTASSAMSFIVPEILTMDETKLKDFLEENKELQAYQKTLDEINRQRPHILSEKE
EALLAEASDPMSSASQTFGMLNNADLTFPTIKNEDGEEVDLTHGRYIGFLESKDRSVREAAFKGMYDTYGKFKNTFSSTL
SGNIKKDNFYAKVRNYESARQSALDDNNIPEKVYDNLVEAVNEKLPLLHRYAELRKKVLKLDELHMYDLFTPLVQDIDMK
IPYEEAQKNVLEALAPLGEEYVDIVKEGYENRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDMFTLAHELGHSV
HSYYTRKFQPFRYGNYSIFVAEVASTTNEALLNDYMLKNVEDEKQKLYLLNHFLEGFRGTVFRQTMFAEFEHDIHVRAQN
GEALTADKLTELYYDLNKKYFGDAVVSDEEIGLEWARIPHFYYNYYVYQYATGYSAAMALSNNILHEKEGAVTRYLDFLK
AGSSDYPIEVLKKAGVDMTSKQPILDALDVFEEKLNEMEKLLLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=116645 X953_RS05260 WP_040954662.1 1049388..1051202(+) (pepF) [Virgibacillus sp. SK37]
ATGGCGAACTCAAAAACCAAAGCATTGCCAAAGCGTGAGGAATTACCAAAAGAACGCACATGGAAATTAGAGGCTATTTT
TGATACAGATGAATTATGGGAGAAAGAATTAAAACAACTACAAACCGATATTCCCAAAATAGAAAAGTATCAAGGAAAAT
TGGCTGAGTCCTCTGATCAGCTGCTTGGTGTATTAAAGTTACAGGATGAATTATCCGAACGATTAGGTAAGCTGTATACA
TATGCGCATATGCGCTATGACCAGGATACAACCAATTCATGGTATCAAGGACTAAATGCACAGGCTGAAAATGTGTTAAC
AACTGCTTCAAGTGCAATGAGTTTCATCGTGCCGGAGATTTTAACGATGGATGAAACGAAGCTAAAGGACTTTTTAGAAG
AGAACAAAGAGCTACAGGCATATCAGAAGACATTGGACGAAATAAATCGACAGCGACCACATATCTTGAGCGAAAAAGAA
GAGGCCTTACTGGCAGAAGCATCTGATCCCATGTCAAGTGCGTCTCAGACATTTGGCATGTTGAATAATGCGGATTTAAC
ATTCCCAACGATCAAAAATGAAGACGGGGAAGAAGTTGACTTAACACATGGCAGATATATTGGTTTTCTTGAATCAAAGG
ATCGAAGTGTAAGAGAAGCTGCTTTTAAAGGAATGTACGATACCTATGGAAAATTTAAAAACACTTTTTCTTCCACGCTA
AGTGGTAATATTAAGAAAGACAATTTTTATGCTAAGGTACGGAATTATGAATCTGCCAGGCAATCTGCTTTAGATGATAA
TAATATTCCTGAAAAAGTGTACGACAATTTAGTCGAAGCGGTAAATGAAAAACTTCCATTACTTCATCGTTATGCGGAAC
TAAGAAAGAAAGTATTGAAGCTGGATGAATTGCATATGTATGATCTTTTCACACCTCTAGTACAGGATATAGATATGAAG
ATTCCATACGAAGAAGCTCAAAAAAATGTGTTAGAAGCACTCGCTCCACTTGGTGAAGAATATGTGGATATTGTGAAAGA
AGGGTATGAGAATCGCTGGATTGACGTGGAAGAAAATAAAGGAAAACGCAGTGGTGCTTATTCTTCAGGTGCATATGGTA
CGAATCCATATATCTTATTAAATTGGCAGGATAACGTAAACGATATGTTTACACTTGCCCACGAGCTCGGCCATTCCGTG
CATAGTTACTATACGCGTAAGTTTCAGCCTTTCCGCTATGGAAACTATTCTATTTTTGTGGCAGAGGTTGCATCGACAAC
GAATGAAGCTTTGTTAAATGATTATATGTTGAAAAATGTAGAGGATGAAAAGCAAAAACTCTATTTATTAAACCACTTTT
TGGAAGGGTTCCGTGGCACTGTATTTCGCCAGACGATGTTTGCAGAGTTTGAGCATGATATCCATGTAAGAGCACAAAAT
GGGGAAGCTTTAACTGCAGATAAGTTAACAGAGTTATATTATGATCTAAACAAAAAATACTTCGGTGATGCAGTAGTCTC
TGATGAAGAAATCGGCTTGGAATGGGCGAGAATCCCACATTTTTATTACAATTATTATGTGTATCAATATGCAACAGGTT
ATTCTGCTGCAATGGCTCTATCGAATAATATTTTGCATGAGAAGGAAGGCGCTGTAACTCGTTACCTTGATTTTCTGAAG
GCGGGAAGTAGTGACTATCCTATTGAGGTACTTAAAAAAGCAGGTGTTGATATGACATCCAAACAACCAATCCTTGATGC
ATTAGATGTATTTGAAGAAAAGCTAAATGAAATGGAAAAACTACTATTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(210-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JN72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

98.179

0.492

Multiple sequence alignment