Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3214_RS02555 Genome accession   NZ_OZ061976
Coordinates   524029..525825 (-) Length   598 a.a.
NCBI ID   WP_162143227.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 519029..530825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3214_RS02535 - 520899..521840 (-) 942 WP_150393117.1 L-lactate dehydrogenase -
  AB3214_RS02540 - 522038..522718 (+) 681 WP_146994868.1 metal ABC transporter ATP-binding protein -
  AB3214_RS02545 - 522733..523530 (+) 798 WP_367368015.1 metal ABC transporter permease -
  AB3214_RS02550 - 523527..523874 (-) 348 WP_063515714.1 DUF960 family protein -
  AB3214_RS02555 pepF 524029..525825 (-) 1797 WP_162143227.1 oligoendopeptidase F Regulator
  AB3214_RS02560 - 526045..527064 (+) 1020 WP_367369172.1 LCP family protein -
  AB3214_RS02565 - 527221..528669 (+) 1449 WP_081674711.1 amino acid permease -
  AB3214_RS02570 - 528740..529120 (+) 381 WP_051225203.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67334.03 Da        Isoelectric Point: 5.0730

>NTDB_id=1166449 AB3214_RS02555 WP_162143227.1 524029..525825(-) (pepF) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
MTKQPTRDQVPEDLTWDLTKVFATDAEWEKTFAQVKTAAADLTQYVGTLGQSGAALLKGIQAILSVYRTFEKVYVYASMR
SDQDTGNAHYQSYDAQASALAAQVSAATAFMEPEILAIPEAKLEQFFIDTPQLADYRHFIEVITVKRAHVLPADQEALLA
AAEDVFSSSAQTFNVLSNSDLKLPMVKDEDGNDVQLTNGVYSTLLQSPNRDVRKGVFQGLYAAYGQYQHTFASTLAGQIK
ADNYTAQVRHYSSAREAAMARNHIPASVYDTLIEQVNAHLPLLHRYVALRKRLLKLDTVHMYDMYTPITGTPQLSYTFAE
AKQEARRALSVLGEDYLSHVDEIFNNRYIDVVENKGKRSGAYSGGAYDTPPYELLNWQDDLENLYTLVHETGHSVHSWYT
RHNQPYQYGDYPIFVAEIASTTNENILTDYLLKTQKDPAVQAYVLNHYLDGFKGTVFRQTQFAEFEHHIHESQQQGTPLT
ADSMSQFYGDLNARYYGPETAKDPEIALEWSRIPHFYYNYYVYQYSTGFAAASTLAAKITSGADGAVDRYINNFLKSGSS
RYAIDTMQSAGVDMTQADYLENAFRVFADRLDALEKLV

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1166449 AB3214_RS02555 WP_162143227.1 524029..525825(-) (pepF) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
ATCACCAAACAACCCACCCGGGACCAAGTACCTGAGGACTTAACCTGGGATTTGACCAAGGTTTTCGCCACCGATGCAGA
GTGGGAAAAGACCTTTGCCCAAGTGAAAACGGCGGCAGCTGATCTGACGCAGTACGTCGGCACGCTGGGCCAAAGCGGGG
CAGCACTGCTCAAGGGTATCCAGGCCATTCTGAGTGTCTACCGGACTTTTGAAAAAGTCTACGTCTACGCCAGCATGCGC
AGTGATCAGGACACCGGCAATGCCCATTACCAGAGCTACGATGCCCAAGCCTCGGCGCTAGCCGCTCAGGTGTCCGCCGC
AACAGCCTTCATGGAACCGGAGATCCTGGCCATCCCAGAGGCCAAGCTAGAGCAATTCTTCATCGATACCCCCCAACTGG
CTGATTATCGCCACTTCATTGAAGTGATCACGGTCAAACGGGCCCACGTGCTGCCCGCCGACCAAGAGGCGCTGCTGGCG
GCTGCGGAGGATGTCTTTTCTTCCTCTGCCCAGACTTTCAACGTCCTGAGCAACTCCGATCTGAAGCTGCCCATGGTCAA
AGATGAGGACGGCAATGACGTTCAGTTGACCAACGGCGTCTACAGCACCTTGCTGCAATCACCTAATCGGGACGTGCGCA
AAGGCGTCTTCCAGGGCCTGTATGCCGCGTATGGCCAATATCAGCACACGTTTGCCAGCACGCTGGCCGGCCAGATCAAG
GCCGATAACTATACCGCCCAAGTCCGCCACTACAGCAGCGCTCGGGAAGCAGCCATGGCCCGCAACCATATTCCGGCCAG
TGTGTATGACACCTTGATTGAACAAGTCAACGCCCACCTGCCCCTGCTCCACCGCTATGTGGCACTGCGCAAGCGGCTGC
TGAAGCTCGACACCGTACACATGTATGACATGTATACTCCGATCACCGGCACGCCCCAGCTCAGCTACACCTTTGCCGAA
GCCAAGCAGGAAGCCCGCCGCGCCTTGAGTGTGTTGGGAGAGGACTACTTGAGCCATGTCGACGAGATTTTCAACAATCG
CTACATTGACGTGGTCGAAAATAAGGGCAAGCGCTCCGGAGCCTATTCCGGCGGGGCCTACGACACGCCGCCTTATGAAC
TGCTCAATTGGCAGGACGATCTGGAGAACCTGTACACCCTGGTCCACGAAACTGGCCACAGTGTTCATTCCTGGTATACG
CGGCACAACCAGCCTTATCAGTACGGTGATTATCCAATCTTCGTCGCGGAAATTGCCTCCACTACAAACGAAAATATTCT
GACGGATTACTTATTGAAGACACAAAAGGATCCCGCCGTTCAAGCCTATGTCCTGAACCACTATTTGGACGGCTTCAAGG
GCACCGTCTTCCGCCAGACCCAGTTTGCAGAATTCGAGCACCATATCCACGAATCCCAGCAGCAGGGCACGCCGCTGACT
GCCGACAGTATGAGTCAGTTCTACGGCGACCTGAATGCCCGCTACTACGGCCCTGAGACCGCCAAAGATCCCGAAATTGC
CTTGGAGTGGAGCCGAATCCCCCACTTCTACTACAATTACTACGTCTATCAATACTCAACCGGCTTCGCGGCGGCATCCA
CTCTGGCCGCCAAAATCACCAGCGGCGCTGATGGCGCGGTGGATCGCTACATCAACAACTTCTTGAAGAGCGGTTCCTCC
CGCTATGCCATCGACACGATGCAAAGCGCCGGCGTTGATATGACCCAGGCCGACTACCTGGAGAACGCCTTCCGCGTCTT
CGCTGACCGGCTGGATGCTTTGGAGAAATTAGTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.054

98.997

0.535

Multiple sequence alignment