Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Y88_RS02825 Genome accession   NZ_OZ061606
Coordinates   603301..605109 (-) Length   602 a.a.
NCBI ID   WP_261909401.1    Uniprot ID   -
Organism   Liquorilactobacillus satsumensis isolate Liquorilactobacillus satsumensis CIRM-BIA2521     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 598301..610109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y88_RS02800 mgtE 598321..599649 (-) 1329 WP_235803433.1 magnesium transporter -
  AB3Y88_RS02805 - 599688..600593 (-) 906 WP_228887809.1 RluA family pseudouridine synthase -
  AB3Y88_RS02810 - 600583..601389 (-) 807 WP_054758148.1 NAD kinase -
  AB3Y88_RS02815 - 601489..602124 (-) 636 Protein_561 GTP pyrophosphokinase family protein -
  AB3Y88_RS02820 - 602331..602966 (+) 636 WP_054758147.1 DsbA family protein -
  AB3Y88_RS02825 pepF 603301..605109 (-) 1809 WP_261909401.1 oligoendopeptidase F Regulator
  AB3Y88_RS02830 - 605180..606202 (-) 1023 WP_228887811.1 competence protein CoiA family protein -
  AB3Y88_RS02835 - 606566..607291 (-) 726 WP_056960155.1 adaptor protein MecA -
  AB3Y88_RS02840 spxA 607517..607915 (-) 399 WP_054756682.1 transcriptional regulator SpxA -
  AB3Y88_RS02845 - 608233..608967 (-) 735 WP_054756680.1 MBL fold metallo-hydrolase -
  AB3Y88_RS02850 - 609061..609522 (+) 462 WP_056960157.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69329.78 Da        Isoelectric Point: 7.2961

>NTDB_id=1166374 AB3Y88_RS02825 WP_261909401.1 603301..605109(-) (pepF) [Liquorilactobacillus satsumensis isolate Liquorilactobacillus satsumensis CIRM-BIA2521]
MEKKKIALLARTEIPAELTWDLTKIFATDAAFETEVHLITTMAGAMKQYRQTMQKDADALVSVLETLLNLKRRIEKVYVY
ASLKNDEDTNNKRYQGYFARIQKLTATVYASFAWFEPEVLALPAEKLAHYYESDARLNAYRHFLDQIRLQKKHFLSEKEE
GLLAAASDIFAAPENIFGILNNADLKFPTVHNDQGQTVELSHGLFGKLLESTHRAVRKEAFNALYQTYEQFQNTFATALT
AHVRTHNFEAQIRNYATAKRAALAPDNLPTAVYDLLIARVNQFLPLLQRYVKLRKQVLKLDEVHMYDLYAPITAVPEKKY
SFSTAKKITLEVLAIFGTEYLEIVKRAFSERWIDVCENRGKRDGAYSSGTYDTPPYILLNWQNNLESLYTLVHEMGHSVH
SYLSNHRQAYQNSDYSIFVAEIASTTNENLLTQYLLENTTDTGFKAYILNHYLDSFKGTVYRQTQFAEFEDWLHIQDAAQ
KPLTAKELNEKYLALNQHYYGPSMQKDALIALEWTRIPHFYYNYYVYQYATGFAAASALAAKIRDEGPKDYLRFLSTGNS
QYPLEAVKRAGVDMTTVEYLDAAFAIFQRRLAELEGLLRKKS

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1166374 AB3Y88_RS02825 WP_261909401.1 603301..605109(-) (pepF) [Liquorilactobacillus satsumensis isolate Liquorilactobacillus satsumensis CIRM-BIA2521]
ATGGAGAAAAAGAAAATTGCGTTACTTGCAAGAACTGAAATTCCTGCAGAGCTTACATGGGATTTGACCAAGATTTTTGC
GACTGATGCAGCATTTGAAACGGAAGTTCATTTGATTACAACAATGGCAGGTGCTATGAAGCAGTACCGGCAGACAATGC
AAAAAGATGCTGATGCATTAGTTTCTGTTTTGGAAACACTCCTGAATTTAAAAAGAAGAATTGAAAAAGTTTATGTTTAT
GCCAGCCTTAAGAATGATGAGGATACAAACAATAAACGCTATCAAGGATATTTTGCTAGGATTCAAAAGCTGACAGCTAC
TGTTTACGCTTCTTTTGCATGGTTTGAACCTGAAGTACTTGCATTGCCGGCGGAAAAATTAGCTCATTACTATGAAAGTG
ATGCGCGGTTGAATGCTTATCGGCATTTTTTAGACCAAATTAGGCTACAAAAGAAGCATTTTCTTTCTGAAAAAGAGGAG
GGCTTGTTGGCGGCTGCATCTGATATTTTTGCGGCTCCGGAAAATATTTTTGGGATTTTAAACAATGCAGATTTAAAATT
TCCAACCGTACATAACGATCAGGGACAGACAGTTGAGTTGTCACATGGATTATTTGGGAAATTGCTGGAATCTACTCACA
GAGCAGTCAGAAAAGAAGCTTTTAATGCTCTTTATCAGACTTATGAGCAATTTCAAAATACTTTTGCAACAGCTTTAACA
GCACATGTACGTACGCATAATTTTGAGGCCCAAATTCGTAACTATGCAACTGCCAAACGGGCCGCACTTGCCCCTGATAA
CTTACCAACAGCAGTTTATGATCTTTTGATAGCAAGGGTCAATCAATTTCTGCCACTTTTACAGCGGTATGTAAAATTAA
GAAAACAAGTACTTAAGCTTGATGAAGTTCACATGTATGACTTGTATGCGCCGATTACTGCTGTACCAGAGAAAAAATAT
AGTTTTTCTACGGCTAAGAAGATCACACTTGAGGTTTTGGCGATTTTTGGAACCGAGTATCTTGAAATAGTAAAGCGGGC
TTTTTCAGAAAGATGGATCGATGTGTGTGAAAATCGCGGGAAAAGAGATGGTGCATATTCTTCAGGAACGTACGATACAC
CACCTTATATTCTTTTAAACTGGCAAAATAATCTTGAAAGTTTGTATACACTTGTGCATGAGATGGGACACAGTGTGCAT
TCGTATCTTAGCAACCACCGCCAAGCTTATCAAAATAGCGATTATTCAATTTTTGTCGCAGAGATTGCATCAACTACTAA
TGAAAATCTATTGACGCAGTATTTACTTGAAAATACTACCGATACAGGTTTCAAAGCGTACATTTTAAATCATTATTTGG
ATAGTTTCAAAGGAACTGTTTATCGGCAGACTCAATTCGCCGAATTTGAGGATTGGCTGCATATTCAAGATGCTGCGCAA
AAGCCCTTGACTGCAAAAGAATTAAATGAAAAATACCTTGCATTGAATCAGCATTACTATGGGCCTAGTATGCAAAAAGA
TGCGCTAATTGCCCTTGAATGGACTAGAATACCGCACTTTTACTATAATTATTATGTTTATCAATATGCAACCGGTTTTG
CAGCGGCGAGTGCTTTGGCGGCGAAGATCAGGGATGAAGGACCCAAAGATTATTTACGTTTCTTGAGCACCGGCAATTCG
CAATACCCGTTGGAGGCAGTTAAGCGTGCGGGAGTTGATATGACAACTGTGGAATATCTTGACGCAGCTTTTGCAATTTT
CCAGCGCCGTTTAGCAGAATTAGAAGGATTGTTGCGCAAAAAAAGTTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-585)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

98.505

0.502

Multiple sequence alignment