Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   X953_RS02415 Genome accession   NZ_CP007161
Coordinates   466933..467886 (+) Length   317 a.a.
NCBI ID   WP_040954210.1    Uniprot ID   A0A075JK36
Organism   Virgibacillus sp. SK37     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461933..472886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X953_RS02390 (X953_02555) - 462472..463011 (-) 540 WP_040954205.1 HD domain-containing protein -
  X953_RS02395 (X953_02560) fni 463301..464356 (+) 1056 WP_040954206.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  X953_RS02400 (X953_02565) - 464438..464899 (+) 462 WP_040954207.1 DUF2188 domain-containing protein -
  X953_RS02405 (X953_02570) - 464991..465857 (+) 867 WP_040954208.1 MBL fold metallo-hydrolase -
  X953_RS02410 (X953_02575) - 465945..466664 (+) 720 WP_040954209.1 DsbA family oxidoreductase -
  X953_RS02415 (X953_02580) ceuB 466933..467886 (+) 954 WP_040954210.1 ABC transporter permease Machinery gene
  X953_RS02420 (X953_02585) - 467876..468826 (+) 951 WP_040954211.1 iron chelate uptake ABC transporter family permease subunit -
  X953_RS02425 (X953_02590) - 468820..469575 (+) 756 WP_040954212.1 ABC transporter ATP-binding protein -
  X953_RS02430 (X953_02595) - 469879..470856 (+) 978 WP_040954213.1 siderophore ABC transporter substrate-binding protein -
  X953_RS02435 (X953_02600) - 471354..472076 (+) 723 WP_040954214.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34855.05 Da        Isoelectric Point: 9.9551

>NTDB_id=116636 X953_RS02415 WP_040954210.1 466933..467886(+) (ceuB) [Virgibacillus sp. SK37]
MKIRYLVTVLIILSITSVFTGVSNVSILDIFSLTEDQIQILTVSRLPRLVSILIAGMSMSICGLIMQQLSKNKFVSPTTS
GTLDSARLGILVSMMIFTSASPFQKMGVSFIFALLGTFIFMKILEKVKFKDAIFIPLIGLMFGNIISSISTFFAYKNDLI
QNLSSWMQGDFSMIMSGNYELMFVSIPILGLAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLVIVALVTASVVLAVGM
IPFLGLIIPNIVTIYQGDHLKKSLIHTALLGAIFVMACDIIGRVIIYPYEIPISLTVGVIGSGVFIYLLLRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=116636 X953_RS02415 WP_040954210.1 466933..467886(+) (ceuB) [Virgibacillus sp. SK37]
ATGAAAATCCGTTACTTAGTTACAGTACTTATTATCTTATCTATTACATCTGTATTTACTGGTGTATCCAATGTATCTAT
ACTAGATATTTTTTCTTTAACCGAAGACCAAATACAAATACTAACAGTAAGTAGACTTCCCAGACTAGTAAGTATTCTAA
TTGCTGGAATGAGCATGAGTATCTGTGGGTTGATTATGCAGCAGCTTAGTAAGAACAAGTTTGTCTCACCTACAACTTCT
GGTACATTGGATTCTGCGAGGCTGGGGATACTTGTTTCGATGATGATCTTTACATCCGCAAGTCCTTTTCAAAAAATGGG
CGTATCCTTTATTTTCGCTTTACTTGGTACGTTTATTTTTATGAAGATACTTGAAAAGGTTAAATTTAAGGATGCTATTT
TCATCCCCTTAATCGGTTTGATGTTTGGTAATATCATAAGTTCTATTTCGACTTTTTTTGCTTATAAGAATGACCTGATT
CAAAATTTGTCATCATGGATGCAAGGCGATTTTTCCATGATAATGAGTGGGAATTATGAGTTGATGTTCGTAAGTATACC
GATTTTAGGTCTGGCATTTTTTTATGCAAATAAGTTTACTATTGCCGGGATGGGAGAAGATTTCTCCAAAAACCTTGGTT
TGAATTATCGTCAAGTAGTGAATTTAGGTTTAGTTATCGTAGCACTTGTGACCGCATCAGTTGTATTGGCTGTTGGTATG
ATTCCATTTTTAGGGTTAATTATCCCGAACATTGTCACAATATATCAGGGTGACCACCTGAAGAAAAGTCTAATACATAC
AGCATTGCTCGGGGCCATATTTGTAATGGCATGTGATATTATCGGCAGGGTTATCATTTATCCATATGAAATCCCAATCA
GTTTAACCGTCGGGGTGATAGGTAGTGGCGTGTTTATCTACCTATTATTAAGGAGAAAGAAATATGGATTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JK36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment