Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3212_RS01970 Genome accession   NZ_OZ061592
Coordinates   388731..390533 (-) Length   600 a.a.
NCBI ID   WP_260274557.1    Uniprot ID   -
Organism   Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 383731..395533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3212_RS01945 mgtE 384031..385383 (-) 1353 WP_260274555.1 magnesium transporter -
  AB3212_RS01950 - 385402..386307 (-) 906 WP_068805433.1 RluA family pseudouridine synthase -
  AB3212_RS01955 - 386297..387103 (-) 807 WP_057784619.1 NAD kinase -
  AB3212_RS01960 - 387109..387759 (-) 651 WP_057784618.1 GTP pyrophosphokinase family protein -
  AB3212_RS01965 - 388035..388649 (+) 615 WP_057784617.1 DsbA family protein -
  AB3212_RS01970 pepF 388731..390533 (-) 1803 WP_260274557.1 oligoendopeptidase F Regulator
  AB3212_RS01975 - 390575..391684 (-) 1110 WP_260274558.1 competence protein CoiA -
  AB3212_RS01980 - 391786..392499 (-) 714 WP_057784614.1 adaptor protein MecA -
  AB3212_RS01985 spxA 392624..393022 (-) 399 WP_057784613.1 transcriptional regulator SpxA -
  AB3212_RS01990 - 393354..394094 (-) 741 WP_260274559.1 MBL fold metallo-hydrolase -
  AB3212_RS01995 - 394243..394752 (+) 510 WP_260274560.1 monooxygenase -
  AB3212_RS02000 - 394855..395529 (+) 675 WP_367364963.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68521.06 Da        Isoelectric Point: 5.2728

>NTDB_id=1166345 AB3212_RS01970 WP_260274557.1 388731..390533(-) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501]
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKVSAQLAWIEPEILAIPNQKLTEFQNNESELKPYEYFLAVLRLKKDHVLSAKEEA
ILAGASSIFGSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1166345 AB3212_RS01970 WP_260274557.1 388731..390533(-) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501]
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGT
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAATATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGTTCCATTTTTGGTTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATTCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGACAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.592

98.5

0.498

Multiple sequence alignment