Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3Y90_RS11525 Genome accession   NZ_OZ061570
Coordinates   2411930..2413294 (-) Length   454 a.a.
NCBI ID   WP_367292935.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei isolate Lacticaseibacillus paracasei CIRM-BIA2373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2406930..2418294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y90_RS11505 - 2407919..2408695 (-) 777 WP_367292934.1 ABC transporter permease -
  AB3Y90_RS11510 - 2408713..2409600 (-) 888 WP_003567248.1 ABC transporter ATP-binding protein -
  AB3Y90_RS11515 - 2409784..2410680 (+) 897 WP_016384787.1 helix-turn-helix domain-containing protein -
  AB3Y90_RS11520 - 2410793..2411908 (-) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  AB3Y90_RS11525 radA 2411930..2413294 (-) 1365 WP_367292935.1 DNA repair protein RadA Machinery gene
  AB3Y90_RS11530 - 2413311..2413853 (-) 543 WP_003567256.1 dUTP diphosphatase -
  AB3Y90_RS11535 - 2414074..2414364 (+) 291 WP_003595964.1 GNAT family N-acetyltransferase -
  AB3Y90_RS11540 - 2414481..2414858 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  AB3Y90_RS11545 - 2415103..2416422 (+) 1320 WP_003571381.1 C1 family peptidase -
  AB3Y90_RS11550 - 2416781..2418127 (+) 1347 WP_367292936.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49127.41 Da        Isoelectric Point: 6.9025

>NTDB_id=1166280 AB3Y90_RS11525 WP_367292935.1 2411930..2413294(-) (radA) [Lacticaseibacillus paracasei isolate Lacticaseibacillus paracasei CIRM-BIA2373]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKIKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFNRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1166280 AB3Y90_RS11525 WP_367292935.1 2411930..2413294(-) (radA) [Lacticaseibacillus paracasei isolate Lacticaseibacillus paracasei CIRM-BIA2373]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGA
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGTTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTAATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTACTACTGCA
GGTGTCAGGTCAATTGGCCGATACTGGCGGAACCGTTTTGTATGTCTCTGGTGAAGAAAGTGCTAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTTGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGCGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAACCGGATTTTTGTACCACGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.212

99.78

0.681
  radA Streptococcus pneumoniae D39

68.212

99.78

0.681
  radA Streptococcus pneumoniae R6

68.212

99.78

0.681
  radA Streptococcus pneumoniae TIGR4

68.212

99.78

0.681
  radA Streptococcus mitis NCTC 12261

68.212

99.78

0.681
  radA Streptococcus mitis SK321

67.991

99.78

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.317

100

0.643

Multiple sequence alignment