Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Y87_RS07510 Genome accession   NZ_OZ061544
Coordinates   1491252..1493057 (-) Length   601 a.a.
NCBI ID   WP_024855562.1    Uniprot ID   -
Organism   Levilactobacillus brevis isolate Levilactobacillus brevis CIRM-BIA2515     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1485564..1500927 1491252..1493057 within 0


Gene organization within MGE regions


Location: 1485564..1500927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y87_RS07480 - 1485564..1486487 (+) 924 WP_041815704.1 IS30 family transposase -
  AB3Y87_RS07485 - 1486855..1487754 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  AB3Y87_RS07490 - 1487751..1488554 (-) 804 WP_021740943.1 NAD kinase -
  AB3Y87_RS07495 - 1488556..1489215 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  AB3Y87_RS07500 - 1489529..1490167 (+) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  AB3Y87_RS07505 - 1490330..1491193 (+) 864 WP_011668200.1 DegV family protein -
  AB3Y87_RS07510 pepF 1491252..1493057 (-) 1806 WP_024855562.1 oligoendopeptidase F Regulator
  AB3Y87_RS07515 - 1493124..1494218 (-) 1095 WP_082265306.1 competence protein CoiA -
  AB3Y87_RS07520 trmB 1494345..1494992 (-) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AB3Y87_RS07525 - 1495058..1495849 (-) 792 WP_011668204.1 phosphotransferase family protein -
  AB3Y87_RS07530 - 1495911..1497137 (-) 1227 WP_011668205.1 ABC transporter permease -
  AB3Y87_RS07535 - 1497134..1497868 (-) 735 WP_011668206.1 ABC transporter ATP-binding protein -
  AB3Y87_RS07540 - 1498078..1498536 (+) 459 WP_011668207.1 HIT family protein -
  AB3Y87_RS07545 - 1498539..1498859 (+) 321 WP_011668208.1 hypothetical protein -
  AB3Y87_RS07550 - 1498972..1499889 (+) 918 WP_011668209.1 peptidylprolyl isomerase PrsA -
  AB3Y87_RS07555 - 1499953..1500927 (-) 975 WP_267668571.1 3'-5' exoribonuclease YhaM family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67159.29 Da        Isoelectric Point: 4.8810

>NTDB_id=1166200 AB3Y87_RS07510 WP_024855562.1 1491252..1493057(-) (pepF) [Levilactobacillus brevis isolate Levilactobacillus brevis CIRM-BIA2515]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQITVVAGLKGQLAQSGVALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1166200 AB3Y87_RS07510 WP_024855562.1 1491252..1493057(-) (pepF) [Levilactobacillus brevis isolate Levilactobacillus brevis CIRM-BIA2515]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAATAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
TCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGAGCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTATCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment