Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3213_RS05465 Genome accession   NZ_OZ061411
Coordinates   1072655..1073362 (-) Length   235 a.a.
NCBI ID   WP_231952379.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067655..1078362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3213_RS05440 rpsO 1067949..1068218 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  AB3213_RS05445 rpsT 1068497..1068751 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  AB3213_RS05450 holA 1068820..1069848 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  AB3213_RS05455 comEC 1069845..1072112 (-) 2268 WP_099947352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3213_RS05460 - 1072109..1072597 (-) 489 WP_011374770.1 ComE operon protein 2 -
  AB3213_RS05465 comEA 1072655..1073362 (-) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB3213_RS05470 - 1073434..1074480 (-) 1047 WP_056946687.1 SepM family pheromone-processing serine protease -
  AB3213_RS05475 coaD 1074482..1074979 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  AB3213_RS05480 rsmD 1074992..1075546 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3213_RS05485 - 1075551..1075841 (-) 291 WP_011374775.1 YlbG family protein -
  AB3213_RS05490 - 1075865..1076953 (-) 1089 WP_011374776.1 CAP-associated domain-containing protein -
  AB3213_RS05495 - 1076964..1078151 (-) 1188 WP_011374777.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26146.73 Da        Isoelectric Point: 9.7682

>NTDB_id=1166138 AB3213_RS05465 WP_231952379.1 1072655..1073362(-) (comEA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTQEQASTG
TSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1166138 AB3213_RS05465 WP_231952379.1 1072655..1073362(-) (comEA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGGG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCGGTGGTC
TACCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCTCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATCGCAACGACCAGTGAGCGTACGCAAGAACAGGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCACGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362

Multiple sequence alignment