Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3213_RS05080 Genome accession   NZ_OZ061411
Coordinates   991089..991955 (-) Length   288 a.a.
NCBI ID   WP_011374694.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 986089..996955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3213_RS05065 topA 987324..989408 (-) 2085 WP_056947604.1 type I DNA topoisomerase -
  AB3213_RS05070 - 989659..990093 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  AB3213_RS05075 - 990122..990988 (-) 867 WP_099947660.1 NAD(P)H-binding protein -
  AB3213_RS05080 dprA 991089..991955 (-) 867 WP_011374694.1 DNA-processing protein DprA Machinery gene
  AB3213_RS05085 - 992010..992771 (-) 762 WP_011374695.1 ribonuclease HII -
  AB3213_RS05090 ylqF 992773..993624 (-) 852 WP_167524711.1 ribosome biogenesis GTPase YlqF -
  AB3213_RS05095 lepB 993756..994286 (-) 531 WP_025015770.1 signal peptidase I -
  AB3213_RS05100 - 994311..994535 (-) 225 WP_011374698.1 YozE family protein -
  AB3213_RS05105 - 994546..995175 (-) 630 WP_056947600.1 YpmS family protein -
  AB3213_RS05110 - 995188..996090 (-) 903 WP_056947682.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31821.78 Da        Isoelectric Point: 8.8338

>NTDB_id=1166134 AB3213_RS05080 WP_011374694.1 991089..991955(-) (dprA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MLTKNQLLLKVHLAAGFGTISELRLAAWLSTSHNWALSALEIAQIARLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1166134 AB3213_RS05080 WP_011374694.1 991089..991955(-) (dprA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGACTATTAGTGAATTACGCTTGGCGGC
GTGGCTATCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTACAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGCAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

100

100

1

Multiple sequence alignment