Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3213_RS01515 Genome accession   NZ_OZ061411
Coordinates   301257..303056 (-) Length   599 a.a.
NCBI ID   WP_172952570.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 296257..308056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3213_RS01490 - 296510..298051 (+) 1542 WP_099713111.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  AB3213_RS01495 - 298075..298695 (+) 621 WP_056947326.1 hypothetical protein -
  AB3213_RS01500 - 298845..299732 (+) 888 WP_056947329.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  AB3213_RS01505 - 299729..300409 (+) 681 WP_056947332.1 metal ABC transporter ATP-binding protein -
  AB3213_RS01510 - 300444..301220 (+) 777 WP_011373994.1 metal ABC transporter permease -
  AB3213_RS01515 pepF 301257..303056 (-) 1800 WP_172952570.1 oligoendopeptidase F Regulator
  AB3213_RS01520 - 303256..304443 (+) 1188 WP_099947230.1 LCP family protein -
  AB3213_RS01525 - 304588..305823 (+) 1236 WP_011373997.1 NupC/NupG family nucleoside CNT transporter -
  AB3213_RS01535 - 306128..306859 (+) 732 WP_011373998.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67535.23 Da        Isoelectric Point: 4.4710

>NTDB_id=1166124 AB3213_RS01515 WP_172952570.1 301257..303056(-) (pepF) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MHKLPTRSEVPENLTWDLSTIFKSDSDFEVAVATLKQALPALEQYNQPFKTADQLVTTIEQVLTLFRQLETVYVYASMKN
DQDTANTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QTTAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSGHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNAHYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQISTNQPGALDNYLAYLKNGSASY
PIETMQKAGVDMTNADYLEHAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1166124 AB3213_RS01515 WP_172952570.1 301257..303056(-) (pepF) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
ATTCACAAATTACCCACACGCTCTGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAGCGACTCAGA
TTTCGAAGTAGCTGTCGCAACGCTCAAACAGGCACTACCAGCACTTGAACAATACAACCAACCGTTTAAAACGGCTGATC
AACTCGTAACAACGATTGAACAAGTGCTAACGCTCTTTAGACAGTTAGAAACGGTCTACGTTTACGCTAGCATGAAAAAC
GATCAAGATACAGCTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGCCAAACCTTCAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTACAGCACTTATGATCAGTTCAAAAATACATTTGCGACAACCCTTGCGACTGAGATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCACCTAAAGCCATTCCTGAATCAGT
CTACACGACCTTAGTCGACCAAGTGAACCAACATTTGCCATTATTACATCGTTATGTTAAATTACGTCAAAAGCAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCACTTTTAGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCA
CAAACAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGGCA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGCGGCGCTTACTCTGGTGGTGCTTACGATACCAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACTGGCCACAGTGGCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCGTCGCTGAAATTGCGTCAACAACGAATGAAAACCTGCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAATGGAACCCCTCTAACGGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCACTACTATGGCGATGCCGTCGCCAAAGATCCTCAAATTGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGTTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCAGTACGAACCAACCGGGTGCACTCGACAATTATCTCGCCTACCTCAAAAATGGGAGTGCCAGTTAC
CCAATTGAAACGATGCAAAAAGCCGGTGTGGATATGACTAACGCCGATTATCTCGAACACGCTTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.822

98.664

0.541

Multiple sequence alignment