Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3231_RS09755 Genome accession   NZ_OZ061355
Coordinates   2181280..2183094 (-) Length   604 a.a.
NCBI ID   WP_105920323.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2176280..2188094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3231_RS09735 - 2177894..2178796 (-) 903 WP_105920325.1 RluA family pseudouridine synthase -
  AB3231_RS09740 - 2178793..2179596 (-) 804 WP_105920324.1 NAD kinase -
  AB3231_RS09745 - 2179593..2180255 (-) 663 WP_050338376.1 GTP pyrophosphokinase family protein -
  AB3231_RS09750 - 2180549..2181184 (+) 636 WP_101873274.1 DsbA family protein -
  AB3231_RS09755 pepF 2181280..2183094 (-) 1815 WP_105920323.1 oligoendopeptidase F Regulator
  AB3231_RS09760 - 2183166..2184257 (-) 1092 WP_105961393.1 competence protein CoiA -
  AB3231_RS09765 - 2184591..2185322 (-) 732 WP_003639103.1 adaptor protein MecA -
  AB3231_RS09770 spxA 2185458..2185856 (-) 399 WP_050338372.1 transcriptional regulator SpxA -
  AB3231_RS09775 - 2186361..2187104 (-) 744 WP_101873269.1 MBL fold metallo-hydrolase -
  AB3231_RS09780 - 2187246..2187746 (+) 501 WP_105961392.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67861.04 Da        Isoelectric Point: 5.0704

>NTDB_id=1166109 AB3231_RS09755 WP_105920323.1 2181280..2183094(-) (pepF) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
MVATKQLPTRSAVPEELTWDLTPIYATQAAYEADVAQVKAALTAVTALKEHFTDSADTVLAGIQAVLDVYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPDELDTYLDQNVALRDYRHLLDTVRLQKGHVLSENEES
LLAGASDIFGASAKTFGVLNNADFKFPTVKDDDGNPVTLSQGLYGVLLESVHPAVRREAFEALYRVYSQFRRTLASTLAS
QVKVHNFVAQAHHYPDARAAALAANQIPTSVYDALVTSVDDHLDLLHRYVALRKRLLGVDQLHMYDMYTPLAEKPAIKYT
YQQAQTTALQALKILGPDYIKHVKTAFGSRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHNQPYQYGDYSIFVAEIASTTNENLLTNYFLETEKDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWIHEQDQAGQ
ALTADRLSKYYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLAERISSKQPDAVTDYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFKVFAERLDEFEQLVTAAQ

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1166109 AB3231_RS09755 WP_105920323.1 2181280..2183094(-) (pepF) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCAGCCGTTCCTGAAGAACTGACTTGGGATCTGACCCCAATCTACGCCAC
TCAGGCTGCGTATGAAGCGGATGTCGCGCAGGTTAAAGCCGCACTGACAGCTGTGACGGCATTGAAAGAACATTTTACGG
ACTCCGCTGATACCGTATTAGCAGGGATTCAGGCCGTCCTGGATGTTTATCGACGGCTTGAAAAGGTCGCCGTGTACGCA
AGTTTGAAGAGTGACCAGGACACCGGCAACAGCACCAACGCCGCACTTGACGATCAGGCTAGCAGTTTAACGGCCAAGGT
ATCCGCCGCCACTGCCTGGTTTGAACCGGCAATTTTGCAATTAACACCGGATGAACTTGATACTTATTTGGATCAAAACG
TCGCATTACGTGATTACCGGCACTTACTCGATACTGTCCGGCTCCAGAAGGGGCACGTTTTATCAGAAAACGAAGAGTCA
TTACTTGCTGGTGCCAGTGATATTTTTGGCGCGTCAGCGAAGACCTTTGGCGTCTTGAACAATGCTGACTTCAAGTTTCC
AACAGTCAAGGATGATGACGGTAACCCAGTGACCCTTTCGCAGGGGTTATATGGCGTGTTGTTAGAATCAGTGCATCCAG
CCGTTCGTCGCGAAGCGTTTGAAGCGTTATACCGGGTTTATAGCCAGTTTCGGCGGACCCTTGCTTCAACCCTAGCGAGT
CAAGTAAAGGTGCATAACTTTGTCGCTCAGGCGCATCACTATCCGGATGCGCGGGCAGCGGCGTTAGCAGCCAACCAGAT
TCCAACGTCAGTTTATGACGCGCTAGTGACATCGGTTGATGACCATCTGGACTTATTACATCGTTACGTGGCCCTCCGTA
AACGGCTGCTGGGGGTAGACCAATTGCATATGTATGATATGTATACACCATTGGCTGAGAAGCCTGCCATCAAATATACT
TATCAGCAAGCCCAGACCACGGCATTACAGGCGTTAAAGATTTTAGGCCCAGATTACATCAAACACGTCAAGACGGCCTT
TGGTTCACGGTGGATCGATGTGGTTGAAAATCAAGGTAAGCGGAGTGGGGCATATTCATCAGGCATGTATGATACGGCGC
CATATATGCTCTTAAATTGGCAAGACAATATCGATAACTTGTACACGCTCGTCCACGAGATGGGACATAGCATGCACTCA
TACTTCACGACCCATAATCAGCCTTATCAGTATGGTGACTATTCGATCTTTGTGGCTGAAATTGCATCGACGACCAACGA
AAACTTGCTGACTAATTATTTCTTGGAGACTGAAAAGGACCCTAAGATGCGGGCGTATGTTTTGAATTACTATCTCGACG
GCTTCAAGGGGACGGTCTTCCGTCAAACGCAATTTGCTGAATTCGAACAATGGATTCATGAACAAGACCAAGCAGGGCAA
GCTTTGACCGCTGACCGGCTATCGAAATACTACTTGCAACTCAATCAACGCTACTACGGTGACGCGGTGGTCAGTGATCC
GCAGATTGCGGATGAATGGTCCCGAATTCCGCATTTCTACTACAACTATTACGTCTACCAGTATGCGACTGGTTTCGCGG
CGGCTTCGACATTGGCTGAACGGATCAGTAGTAAGCAACCAGACGCAGTTACGGATTATCTGGGGTATCTGAAGGCGGGG
TCTTCGGCGTTCCCAATCGATGTGATGCATCGTGCGGGTGTCGATATGACTAAGCCGGATTACTTGGATGCTGCATTCAA
AGTGTTTGCTGAACGCTTGGATGAATTTGAACAATTGGTGACTGCTGCCCAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.872

98.013

0.518

Multiple sequence alignment