Detailed information NTG0116608

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RG44_RS14030
• Genome accession: NZ_CP010160
• Coordinates: 2608245..2609270 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain H1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2603245..2614270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG44_RS14000 (RG44_12950)	zapB	2603329..2603574 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
RG44_RS14005 (RG44_12955)	rraA	2603659..2604144 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RG44_RS14010 (RG44_12960)	menA	2604237..2605163 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RG44_RS14015 (RG44_12965)	hslU	2605230..2606561 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
RG44_RS14020 (RG44_12970)	hslV	2606571..2607101 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RG44_RS14025 (RG44_12975)	ftsN	2607194..2608153 (-)	960	WP_000068828.1	cell division protein FtsN	-
RG44_RS14030 (RG44_12980)	cytR	2608245..2609270 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
RG44_RS14035 (RG44_12985)	priA	2609426..2611624 (-)	2199	WP_073544816.1	primosomal protein N'	Machinery gene
RG44_RS14040 (RG44_12990)	rpmE	2611827..2612039 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
RG44_RS14045 (RG44_12995)	yiiX	2612100..2612708 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
RG44_RS14050 (RG44_13000)	metJ	2612892..2613209 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=116608 RG44_RS14030 WP_000644904.1 2608245..2609270(-) (cytR) [Escherichia coli strain H1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=116608 RG44_RS14030 WP_000644904.1 2608245..2609270(-) (cytR) [Escherichia coli strain H1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628