Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | AB3223_RS01945 | Genome accession | NZ_OZ061351 |
| Coordinates | 371702..373504 (+) | Length | 600 a.a. |
| NCBI ID | WP_068805423.1 | Uniprot ID | A0AAP5TE32 |
| Organism | Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Genomic Context
Location: 366702..378504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3223_RS01920 | - | 367483..367992 (-) | 510 | WP_057784611.1 | hypothetical protein | - |
| AB3223_RS01925 | - | 368141..368881 (+) | 741 | WP_068805415.1 | MBL fold metallo-hydrolase | - |
| AB3223_RS01930 | spxA | 369213..369611 (+) | 399 | WP_367370921.1 | transcriptional regulator SpxA | - |
| AB3223_RS01935 | - | 369736..370449 (+) | 714 | WP_367370922.1 | adaptor protein MecA | - |
| AB3223_RS01940 | - | 370551..371660 (+) | 1110 | WP_068805421.1 | competence protein CoiA | - |
| AB3223_RS01945 | pepF | 371702..373504 (+) | 1803 | WP_068805423.1 | oligoendopeptidase F | Regulator |
| AB3223_RS01950 | - | 373586..374200 (-) | 615 | WP_057784617.1 | DsbA family protein | - |
| AB3223_RS01955 | - | 374476..375126 (+) | 651 | WP_367370923.1 | GTP pyrophosphokinase family protein | - |
| AB3223_RS01960 | - | 375132..375938 (+) | 807 | WP_057784619.1 | NAD kinase | - |
| AB3223_RS01965 | - | 375928..376833 (+) | 906 | WP_068805433.1 | RluA family pseudouridine synthase | - |
| AB3223_RS01970 | mgtE | 376852..378204 (+) | 1353 | WP_057784621.1 | magnesium transporter | - |
Sequence
Protein
Download Length: 600 a.a. Molecular weight: 68466.97 Da Isoelectric Point: 5.3646
>NTDB_id=1166065 AB3223_RS01945 WP_068805423.1 371702..373504(+) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKASAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFGSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKASAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFGSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL
Nucleotide
Download Length: 1803 bp
>NTDB_id=1166065 AB3223_RS01945 WP_068805423.1 371702..373504(+) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGC
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGTTCCATTTTTGGTTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATCCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGACAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGC
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGTTCCATTTTTGGTTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATCCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGACAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
50.761 |
98.5 |
0.5 |