Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3223_RS00420 Genome accession   NZ_OZ061351
Coordinates   84155..85525 (+) Length   456 a.a.
NCBI ID   WP_068806214.1    Uniprot ID   A0AAP5WF87
Organism   Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79155..90525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3223_RS00395 - 79819..80490 (+) 672 WP_057784533.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  AB3223_RS00400 - 80904..82253 (-) 1350 WP_367370846.1 aminopeptidase C -
  AB3223_RS00405 rpiA 82339..83025 (-) 687 WP_057784531.1 ribose-5-phosphate isomerase RpiA -
  AB3223_RS00410 - 83012..83338 (-) 327 WP_367370847.1 GNAT family N-acetyltransferase -
  AB3223_RS00415 - 83537..84073 (+) 537 WP_367370848.1 dUTP diphosphatase -
  AB3223_RS00420 radA 84155..85525 (+) 1371 WP_068806214.1 DNA repair protein RadA Machinery gene
  AB3223_RS00425 - 85556..86674 (+) 1119 WP_367370849.1 PIN/TRAM domain-containing protein -
  AB3223_RS00430 gltX 86758..88248 (+) 1491 WP_367370850.1 glutamate--tRNA ligase -
  AB3223_RS00435 cysS 88358..89764 (+) 1407 WP_260274835.1 cysteine--tRNA ligase -
  AB3223_RS00440 - 89771..90190 (+) 420 WP_068806207.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50064.55 Da        Isoelectric Point: 7.7961

>NTDB_id=1166058 AB3223_RS00420 WP_068806214.1 84155..85525(+) (radA) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
MAKAKTQFVCQNCGYVSPRFLGRCPSCGQWNTLVEERVESEKVNHKARVSFEGNRAKPQLISQVDMSETPRVKTGLDEFN
RVLGGGIVTGSLVLIGGDPGIGKSTLLLQISGQLSETKHRVLYVSGEESAAQIKMRADRLHVASENFYLFPETDMNSIQA
AIKELKPTYVIIDSIQTMQEPDIQSAVGSVAQVREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRETGLQEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPTTFG
NAKRTASGLDHNRVSLIMAVLEKRANFLLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSYRDKGTDPMDAFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIYLPKNNLQGWTPPTGIEVVGVATLSDALRRIFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1166058 AB3223_RS00420 WP_068806214.1 84155..85525(+) (radA) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
ATGGCAAAAGCAAAGACTCAGTTTGTCTGTCAAAATTGTGGCTACGTTTCGCCTCGATTTTTAGGCCGGTGTCCAAGTTG
TGGTCAATGGAACACTTTGGTTGAAGAGCGGGTTGAAAGCGAAAAAGTTAATCACAAAGCTCGAGTTAGTTTCGAAGGTA
ACCGAGCCAAACCGCAACTAATTAGCCAAGTTGATATGAGTGAAACTCCCCGTGTAAAAACAGGTTTGGATGAGTTTAAC
CGAGTTTTAGGCGGTGGCATTGTAACTGGATCACTTGTTTTGATTGGTGGTGATCCAGGAATCGGAAAATCAACATTGCT
TTTGCAAATTTCTGGTCAATTAAGCGAAACAAAGCATCGCGTTTTATATGTATCTGGGGAAGAAAGTGCTGCCCAAATCA
AAATGCGTGCCGACCGTTTACATGTTGCTAGTGAGAATTTTTATTTGTTCCCAGAAACTGACATGAATAGCATCCAAGCG
GCTATCAAAGAACTCAAACCAACCTATGTGATTATCGATTCGATTCAGACAATGCAGGAGCCGGATATCCAATCCGCTGT
TGGTAGTGTAGCGCAGGTTCGTGAGATCACTGCCGAACTGATGCAGATTGCAAAAACTAACAATATTACAATTTTTATTG
TCGGTCATGTGACTAAGGGTGGTGCAATTGCGGGGCCGAAGATCTTGGAACATATGGTGGATACAGTTCTCTACTTTGAA
GGTGATTTGCATCACACTTATCGGATTCTTCGGGCCGTAAAGAACCGATTTGGTTCAACTAATGAACTGGGAATTTTTGA
AATGCGTGAAACAGGGCTACAAGAGGTTGCCAATCCTTCAGAAATTTTCTTGGAGGAACGGCTAAAAGATGCCACGGGTT
CTGCCATCGTGGTTTCAATGGAAGGGACGCGACCAATTTTGGTTGAAGTCCAAGCTTTAATCACGCCCACTACTTTTGGT
AATGCAAAACGCACAGCTAGTGGACTGGATCATAACCGAGTTTCTTTGATTATGGCGGTTTTGGAAAAACGGGCTAATTT
TTTGCTGCAGAACCAAGATGCGTATTTAAAAGCTGCCGGTGGTGTCAAGTTGGATGAACCGGCAATTGATTTAGCTATTG
CAATTAGTATTGCGTCTAGTTACCGCGATAAGGGAACGGACCCGATGGACGCATTTGTGGGTGAAATTGGATTGACGGGT
GAAATTCGCCGGGTAAACCGAATTGAACAACGGGTGGCTGAGGCTCAAAAGCTGGGCTTCAAACGTATTTATTTGCCTAA
AAACAACCTTCAAGGATGGACACCGCCAACTGGTATCGAGGTTGTGGGTGTCGCAACTTTGTCAGATGCATTGCGAAGAA
TTTTTAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.132

99.781

0.68
  radA Streptococcus mitis NCTC 12261

67.912

99.781

0.678
  radA Streptococcus pneumoniae Rx1

67.912

99.781

0.678
  radA Streptococcus pneumoniae TIGR4

67.912

99.781

0.678
  radA Streptococcus pneumoniae D39

67.912

99.781

0.678
  radA Streptococcus pneumoniae R6

67.912

99.781

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

67.329

99.342

0.669

Multiple sequence alignment