Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Y91_RS02080 Genome accession   NZ_OZ061345
Coordinates   379157..380950 (+) Length   597 a.a.
NCBI ID   WP_042250878.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides isolate Leuconostoc mesenteroides FLEC04     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 374157..385950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y91_RS02060 - 374332..375774 (+) 1443 WP_011679287.1 ABC transporter substrate-binding protein/permease -
  AB3Y91_RS02065 - 375771..376523 (+) 753 WP_011679288.1 amino acid ABC transporter ATP-binding protein -
  AB3Y91_RS02070 - 376590..378035 (+) 1446 WP_367291986.1 ABC transporter substrate-binding protein/permease -
  AB3Y91_RS02075 - 378077..379099 (+) 1023 WP_042250881.1 competence protein CoiA -
  AB3Y91_RS02080 pepF 379157..380950 (+) 1794 WP_042250878.1 oligoendopeptidase F Regulator
  AB3Y91_RS02085 - 381055..381450 (+) 396 WP_025267787.1 cytidine deaminase -
  AB3Y91_RS02090 - 381467..381907 (+) 441 WP_004164656.1 nucleoside 2-deoxyribosyltransferase -
  AB3Y91_RS02095 - 381907..382836 (+) 930 WP_042250874.1 phosphoglycerate dehydrogenase -
  AB3Y91_RS02100 - 382856..383224 (+) 369 WP_014324330.1 helix-turn-helix domain-containing protein -
  AB3Y91_RS02105 pheS 383528..384577 (+) 1050 WP_025267790.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67676.40 Da        Isoelectric Point: 4.6684

>NTDB_id=1166041 AB3Y91_RS02080 WP_042250878.1 379157..380950(+) (pepF) [Leuconostoc mesenteroides isolate Leuconostoc mesenteroides FLEC04]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWETAFNETRKSAQALSKYAGHAGDSADVLKEALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALSNETLDAYLATAGLKKYAHFFDVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKGIVLAALAPLGEDYIAIVQKAFDERWIDVVENKGKRTGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSTFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=1166041 AB3Y91_RS02080 WP_042250878.1 379157..380950(+) (pepF) [Leuconostoc mesenteroides isolate Leuconostoc mesenteroides FLEC04]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTTACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAACCGCTTTTAATGAGACACGAAAGTCTGCACAAGCATTAAGTAAGTACGCTGGACACGCCGGGGATTCTG
CGGATGTTTTGAAAGAAGCCTTAGAAGCAGATTTAGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAATCAAAAGTATAGTGCGTATAATGCTCGTGTTCAAGGCTTATATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGACACTAGATGCATACTTAGCGACAGCTGGTTTGA
AAAAATATGCACACTTTTTTGACGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGACATCTTTAATGCTTCTGAACAGACTTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGACTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTACGTG
AGGAAGCGTTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACTTTATCTTCACATGTCAAG
GGACATAACTTTTTGGCTAAAACCCGTCACTATGACTCAGCTCGTCAAGCTGCTGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACAGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACACTCTTACGATTTATATGTACCACTTGTTGATGAAATTAATTTTGAAGTAACATATGAAAAA
GCAAAAGGCATTGTTTTGGCGGCATTGGCACCGTTAGGCGAGGATTACATCGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAATAAGGGGAAGCGTACTGGCGCTTATTCAAGCGGTTCGTATGATACAAAACCATTCATTT
TGCTTAACTGGCAGAACAATTTGAATAATGTTTATACATTGGCTCATGAAATGGGACATTCGGTTCATTCATACTTTACA
CGCCATAATCAAGAGTATCATTATGGTGATTATCCAATATTCTTAGCTGAAATTGCTTCAACTACTAATGAGGGATTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCCTACGTATTGAACCAGTATTTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGATGAGATGAGTACATTCTATGGATCGTTGAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATTGC
GTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCGACAGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAACTATCTGAAAGCAGGTAATTCAGATTATGCT
TTAAATGTGATCAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-183)

Peptidase family M3 (Peptidase_M3)

(204-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment