Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | AB3Y89_RS07490 | Genome accession | NZ_OZ061338 |
| Coordinates | 1432869..1433174 (-) | Length | 101 a.a. |
| NCBI ID | WP_025016385.1 | Uniprot ID | A0AAX0VCA2 |
| Organism | Latilactobacillus sakei isolate Latilactobacillus sakei J33 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1427869..1438174
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3Y89_RS07455 | - | 1428308..1428673 (+) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| AB3Y89_RS07465 | - | 1429216..1429674 (-) | 459 | WP_011374992.1 | hypothetical protein | - |
| AB3Y89_RS07470 | - | 1429729..1430925 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| AB3Y89_RS07475 | - | 1430947..1431957 (-) | 1011 | WP_099947695.1 | class I SAM-dependent methyltransferase | - |
| AB3Y89_RS07480 | - | 1432081..1432419 (-) | 339 | WP_056947123.1 | hypothetical protein | - |
| AB3Y89_RS07485 | comGF | 1432382..1432894 (-) | 513 | WP_025016386.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB3Y89_RS07490 | comGE | 1432869..1433174 (-) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| AB3Y89_RS07495 | comGD | 1433161..1433613 (-) | 453 | WP_076632063.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB3Y89_RS07500 | comGC | 1433585..1433884 (-) | 300 | WP_076632062.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AB3Y89_RS07505 | comGB | 1433881..1434888 (-) | 1008 | WP_076632061.1 | type II secretion system F family protein | Machinery gene |
| AB3Y89_RS07510 | comGA | 1434881..1435771 (-) | 891 | WP_367294528.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3Y89_RS07515 | - | 1435887..1436618 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AB3Y89_RS07520 | - | 1436709..1437209 (-) | 501 | WP_099947696.1 | VanZ family protein | - |
| AB3Y89_RS07525 | - | 1437306..1437680 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11451.47 Da Isoelectric Point: 11.1577
>NTDB_id=1166025 AB3Y89_RS07490 WP_025016385.1 1432869..1433174(-) (comGE) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
MFRSRPAFLLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
MFRSRPAFLLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=1166025 AB3Y89_RS07490 WP_025016385.1 1432869..1433174(-) (comGE) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
ATGTTCAGAAGTAGGCCGGCTTTTTTACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CTGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGGTGGCAAATGGGGCGAACAATCTATACAGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTTACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CTGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGGTGGCAAATGGGGCGAACAATCTATACAGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
99.01 |
100 |
0.99 |