Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AB3Y89_RS06290 Genome accession   NZ_OZ061338
Coordinates   1199548..1201614 (-) Length   688 a.a.
NCBI ID   WP_231953244.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei J33     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1194548..1206614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y89_RS06265 - 1194671..1195618 (-) 948 WP_025015736.1 hypothetical protein -
  AB3Y89_RS06270 - 1195707..1197425 (-) 1719 WP_011374765.1 ribonuclease J -
  AB3Y89_RS06275 rpsO 1197653..1197922 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  AB3Y89_RS06280 rpsT 1198201..1198455 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  AB3Y89_RS06285 holA 1198523..1199551 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  AB3Y89_RS06290 comEC 1199548..1201614 (-) 2067 WP_231953244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3Y89_RS06295 - 1201812..1202300 (-) 489 WP_011374770.1 ComE operon protein 2 -
  AB3Y89_RS06300 comEA 1202358..1203065 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB3Y89_RS06305 - 1203139..1204185 (-) 1047 WP_035145546.1 SepM family pheromone-processing serine protease -
  AB3Y89_RS06310 coaD 1204187..1204684 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  AB3Y89_RS06315 rsmD 1204697..1205251 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3Y89_RS06320 - 1205256..1205546 (-) 291 WP_016265218.1 YlbG family protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 77625.58 Da        Isoelectric Point: 9.6852

>NTDB_id=1166018 AB3Y89_RS06290 WP_231953244.1 1199548..1201614(-) (comEC) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRQWQQVRHPVLFYGAKDFERIQGATNQNE
FDYARFLAQQKRCFYQLTLAKETTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGR
LGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPV
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKR
TLASLYLASFLAIHFNPTGQVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGV
DHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGTAFKVGPQKFNVLAPTKP
GKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSETASDPTVIKKLHLKGALISAGRENRY
GHPHQETLTTLQAAKVPYWLTAQQGMLTWSYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=1166018 AB3Y89_RS06290 WP_231953244.1 1199548..1201614(-) (comEC) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
ATGACACAACCACAACAACCGGTAGCACAGTATTTTAAAGTGCAACCCGATGCGATTCAAGTCGCGGGCGACAGTGTTCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGAGGCAGT
GGCAACAAGTACGACACCCCGTTTTGTTCTATGGCGCAAAAGATTTTGAACGTATACAAGGAGCTACCAATCAAAATGAG
TTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGTTAGCCAAAGAAACAACTTTTGCGCT
GAGACGTCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCGC
TTAGGGATTATTCATCTATTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTA
TTGCCGTATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGTTACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACGTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCACGTGCTGACGATAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTAGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATCCCCCATGCGATGATTACGTTTGGTAAAATCCCCTTGTTACCAT
TACTATTGATTGTGACGGTCAGCCTCTTGTTAATCGATGGCCAGGCCATTAGCAATCAGTGGCGTAAACGGCTGAAACGC
ACATTGGCAAGTTTGTATTTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTGGCCAGGTAGTCATGTTTGATATTGG
TCAGGGTGATAGTTTGTTGATTCAAACGCCGTTTAACCGGCATCAGCTTTTAATCGATACTGGTGGCCGCCTAGCGCTAC
CGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAGCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTA
GATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATTTGAATCAGATTTTGAAACAAATTCG
TGTTGATCGAATCATTTGTGCTGCCGGGTTACCGCAAAATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGG
TTCAAATTGAACCCTATTTAGCCGGGACCGCTTTTAAAGTGGGGCCGCAAAAGTTTAACGTCTTAGCGCCGACTAAGCCG
GGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTAGCTGGCTGTTTACAGGGGATTTAGA
GCAAGAAGGCGAACGAGCGATTATCGAGCGGTATCCACAGTTAACCGTCGATTATTTAAAAGTTGGCCATCACGGTAGTG
AAACGGCTAGTGACCCCACCGTGATTAAAAAATTACACTTAAAAGGGGCATTAATCTCAGCCGGCAGAGAGAATCGTTAT
GGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATTGGCTAACGGCCCAGCAGGGGATGTT
GACCTGGTCGTATGGCCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(427-635)

Competence protein (Competence)

(142-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

97.238

100

0.972

Multiple sequence alignment