Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB3Y89_RS03330 Genome accession   NZ_OZ061338
Coordinates   625162..625590 (+) Length   142 a.a.
NCBI ID   WP_154255254.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei J33     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 620162..630590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y89_RS03315 - 621740..622828 (+) 1089 WP_367294592.1 glycosyltransferase family 4 protein -
  AB3Y89_RS03320 - 622855..623520 (-) 666 WP_025016329.1 YigZ family protein -
  AB3Y89_RS03325 comFA 623582..624919 (+) 1338 WP_142501193.1 DEAD/DEAH box helicase Machinery gene
  AB3Y89_RS03330 comFC 625162..625590 (+) 429 WP_154255254.1 ComF family protein Machinery gene
  AB3Y89_RS03335 raiA 625717..626262 (+) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB3Y89_RS03340 secA 626511..628874 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  AB3Y89_RS03345 prfB 628944..630060 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16678.13 Da        Isoelectric Point: 10.0721

>NTDB_id=1166011 AB3Y89_RS03330 WP_154255254.1 625162..625590(+) (comFC) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1166011 AB3Y89_RS03330 WP_154255254.1 625162..625590(+) (comFC) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

95.775

100

0.958
  comFC Lactococcus lactis subsp. cremoris KW2

38.028

100

0.38

Multiple sequence alignment