Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB3225_RS08260 | Genome accession | NZ_OZ061332 |
| Coordinates | 1592986..1593294 (+) | Length | 102 a.a. |
| NCBI ID | WP_004270901.1 | Uniprot ID | A0AAJ0LFY3 |
| Organism | Latilactobacillus curvatus isolate Latilactobacillus curvatus J116 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1587986..1598294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3225_RS08220 | - | 1588268..1588507 (-) | 240 | WP_004270892.1 | cytochrome b5 domain-containing protein | - |
| AB3225_RS08225 | - | 1588702..1589037 (+) | 336 | WP_076786752.1 | hypothetical protein | - |
| AB3225_RS08235 | - | 1589218..1589595 (-) | 378 | WP_039099519.1 | hypothetical protein | - |
| AB3225_RS08240 | - | 1589698..1590198 (+) | 501 | WP_004270893.1 | VanZ family protein | - |
| AB3225_RS08245 | - | 1590288..1591019 (+) | 732 | WP_004270897.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AB3225_RS08250 | comGA | 1591123..1591998 (+) | 876 | WP_116843546.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3225_RS08255 | comGB | 1591988..1592989 (+) | 1002 | WP_076786758.1 | type II secretion system F family protein | Machinery gene |
| AB3225_RS08260 | comGC | 1592986..1593294 (+) | 309 | WP_004270901.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB3225_RS08265 | - | 1593326..1593718 (+) | 393 | WP_004270899.1 | hypothetical protein | - |
| AB3225_RS08270 | - | 1593783..1594010 (+) | 228 | WP_158070299.1 | hypothetical protein | - |
| AB3225_RS08275 | - | 1593976..1594059 (+) | 84 | Protein_1573 | type II secretion system protein | - |
| AB3225_RS08280 | - | 1594063..1594461 (+) | 399 | WP_240327155.1 | ComGF family competence protein | - |
| AB3225_RS08285 | - | 1594439..1594741 (+) | 303 | WP_367370493.1 | hypothetical protein | - |
| AB3225_RS08290 | - | 1594878..1595897 (+) | 1020 | WP_307722871.1 | class I SAM-dependent methyltransferase | - |
| AB3225_RS08295 | - | 1595919..1597112 (+) | 1194 | WP_004270911.1 | acetate/propionate family kinase | - |
| AB3225_RS08300 | - | 1597172..1597624 (+) | 453 | WP_076786762.1 | laaL | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 11238.13 Da Isoelectric Point: 9.6264
>NTDB_id=1165971 AB3225_RS08260 WP_004270901.1 1592986..1593294(+) (comGC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
Nucleotide
Download Length: 309 bp
>NTDB_id=1165971 AB3225_RS08260 WP_004270901.1 1592986..1593294(+) (comGC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Latilactobacillus sakei subsp. sakei 23K |
60 |
98.039 |
0.588 |