Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3225_RS03395 Genome accession   NZ_OZ061332
Coordinates   658851..660659 (+) Length   602 a.a.
NCBI ID   WP_076787487.1    Uniprot ID   A0A385AFP9
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus J116     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 653851..665659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3225_RS03385 - 656029..657267 (-) 1239 WP_004265060.1 NupC/NupG family nucleoside CNT transporter -
  AB3225_RS03390 - 657446..658588 (-) 1143 WP_076787506.1 LCP family protein -
  AB3225_RS03395 pepF 658851..660659 (+) 1809 WP_076787487.1 oligoendopeptidase F Regulator
  AB3225_RS03400 - 660700..661476 (-) 777 WP_253733350.1 metal ABC transporter permease -
  AB3225_RS03405 - 661511..662191 (-) 681 WP_004265149.1 metal ABC transporter ATP-binding protein -
  AB3225_RS03410 - 662188..663075 (-) 888 WP_076787483.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  AB3225_RS03415 - 663349..663903 (-) 555 WP_076787481.1 hypothetical protein -
  AB3225_RS03420 - 664009..665550 (-) 1542 WP_076787479.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67267.23 Da        Isoelectric Point: 4.5897

>NTDB_id=1165957 AB3225_RS03395 WP_076787487.1 658851..660659(+) (pepF) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLEPAILAIPAGQLADWLTKTPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVTHIVDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1165957 AB3225_RS03395 WP_076787487.1 658851..660659(+) (pepF) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAGCCACTTTCCGCCAACTCGAAACAATTTATGTTTATGCTAGCATG
AAAAATGATCAAGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCAGCTGGGCAATTAGCAGATTGGCTTACCAAGACGCCTAATT
TAGCAGTTTACAGCCACTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGAGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGATGGGGTCTACAGCCAACTTTTACAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCACAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCAAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTGAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTCTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAGGCGTTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTACCCATATTGTTGATGA
CCGCTTAATCGATGTTTGTGAAAATCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAATCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAATCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGCATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385AFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.173

0.54

Multiple sequence alignment