Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB3Y92_RS12100 Genome accession   NZ_OZ061327
Coordinates   2337519..2338289 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2332519..2343289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS12080 - 2332611..2333432 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  AB3Y92_RS12085 - 2333458..2334096 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  AB3Y92_RS12090 glyS 2334264..2336309 (-) 2046 WP_268466097.1 glycine--tRNA ligase subunit beta -
  AB3Y92_RS12095 glyQ 2336302..2337189 (-) 888 WP_058014649.1 glycine--tRNA ligase subunit alpha -
  AB3Y92_RS12100 recO 2337519..2338289 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  AB3Y92_RS12105 - 2338325..2338468 (-) 144 WP_003217288.1 YqzL family protein -
  AB3Y92_RS12110 era 2338617..2339522 (-) 906 WP_367294299.1 GTPase Era -
  AB3Y92_RS12115 - 2339515..2339913 (-) 399 WP_003217296.1 cytidine deaminase -
  AB3Y92_RS12120 - 2340027..2340413 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  AB3Y92_RS12125 ybeY 2340391..2340870 (-) 480 WP_058014647.1 rRNA maturation RNase YbeY -
  AB3Y92_RS12130 - 2340871..2342958 (-) 2088 WP_049754949.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=1165917 AB3Y92_RS12100 WP_034661344.1 2337519..2338289(-) (recO) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1165917 AB3Y92_RS12100 WP_034661344.1 2337519..2338289(-) (recO) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCGAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTGGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTAGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment