Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3Y92_RS11575 Genome accession   NZ_OZ061327
Coordinates   2248809..2250545 (-) Length   578 a.a.
NCBI ID   WP_061408509.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2243809..2255545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS11560 - 2244687..2245787 (-) 1101 WP_268466054.1 Rap family tetratricopeptide repeat protein -
  AB3Y92_RS11565 spo0A 2246244..2247047 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  AB3Y92_RS11570 spoIVB 2247333..2248610 (-) 1278 WP_058014714.1 SpoIVB peptidase -
  AB3Y92_RS11575 recN 2248809..2250545 (-) 1737 WP_061408509.1 DNA repair protein RecN Machinery gene
  AB3Y92_RS11580 argR 2250579..2251028 (-) 450 WP_058014712.1 transcriptional regulator AhrC/ArgR -
  AB3Y92_RS11585 - 2251188..2252042 (-) 855 WP_061408512.1 TlyA family RNA methyltransferase -
  AB3Y92_RS11590 dxs 2252039..2253940 (-) 1902 WP_061408514.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB3Y92_RS11595 - 2254091..2254981 (-) 891 WP_169057015.1 polyprenyl synthetase family protein -
  AB3Y92_RS11600 - 2254971..2255231 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.62 Da        Isoelectric Point: 4.7788

>NTDB_id=1165913 AB3Y92_RS11575 WP_061408509.1 2248809..2250545(-) (recN) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTNVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1165913 AB3Y92_RS11575 WP_061408509.1 2248809..2250545(-) (recN) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACTGATGAAATGATGATCCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAAAT
GGTGCACCGATTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATTAACGACGATCTAAAAAA
GCTTTCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTTCAAATGCGAAGCATGCTGGATCAATTAG
AGTTTGACCCAGCACGCCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAGCGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGGGACAGTCATCTGCAGAC
ACTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACATTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGGAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCTTCTGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAGGTCACTTCCATTATTTTCGATGAGGTGGATACA
GGCGTAAGCGGCAGAGTTGCACAGGCAATTGCCGAAAAAATTTATAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCATCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCTAAAGCTGGTAGAACACTGACAA
ACGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTCGAAGTCACTGAGCTGACA
AAACAGCATGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.087

100

0.751

Multiple sequence alignment