Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB3Y92_RS10610 Genome accession   NZ_OZ061327
Coordinates   2074544..2075155 (+) Length   203 a.a.
NCBI ID   WP_058014838.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069544..2080155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS10570 - 2069712..2070830 (+) 1119 WP_235567057.1 NADH-dependent flavin oxidoreductase -
  AB3Y92_RS10575 - 2070881..2071387 (-) 507 WP_268465939.1 PTS glucose transporter subunit IIA -
  AB3Y92_RS10580 - 2071555..2071974 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  AB3Y92_RS10585 - 2071995..2072447 (-) 453 WP_058014840.1 YppG family protein -
  AB3Y92_RS10590 - 2072554..2072925 (-) 372 WP_044141136.1 YppE family protein -
  AB3Y92_RS10595 - 2072983..2073216 (-) 234 WP_223251159.1 DUF5446 family protein -
  AB3Y92_RS10600 sspM 2073413..2073517 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  AB3Y92_RS10605 - 2073541..2074497 (-) 957 WP_058014839.1 DUF2515 domain-containing protein -
  AB3Y92_RS10610 recU 2074544..2075155 (+) 612 WP_058014838.1 Holliday junction resolvase RecU Machinery gene
  AB3Y92_RS10615 - 2075199..2077913 (+) 2715 WP_058014837.1 PBP1A family penicillin-binding protein -
  AB3Y92_RS10620 - 2077948..2078457 (-) 510 WP_058014836.1 YpoC family protein -
  AB3Y92_RS10625 nth 2078454..2079116 (-) 663 WP_012010351.1 endonuclease III -
  AB3Y92_RS10630 - 2079134..2079838 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23270.40 Da        Isoelectric Point: 8.9930

>NTDB_id=1165911 AB3Y92_RS10610 WP_058014838.1 2074544..2075155(+) (recU) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELVEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1165911 AB3Y92_RS10610 WP_058014838.1 2074544..2075155(+) (recU) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAC
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTTTGGGAGCGGCAGAAG
CTAAACGGCCGAAAATCCATTAGTAAAGACGAATTAGTGGAAGCAGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment