Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB3Y92_RS07610 Genome accession   NZ_OZ061327
Coordinates   1476628..1476906 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471628..1481906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS07585 - 1471720..1471995 (-) 276 WP_034619939.1 hypothetical protein -
  AB3Y92_RS07590 - 1472139..1473758 (+) 1620 WP_003212114.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB3Y92_RS07595 - 1473797..1475029 (-) 1233 WP_268467039.1 aminopeptidase -
  AB3Y92_RS07600 - 1475138..1475269 (-) 132 WP_003210922.1 protein YkpC -
  AB3Y92_RS07605 mreBH 1475344..1476351 (-) 1008 WP_268467041.1 rod-share determining protein MreBH -
  AB3Y92_RS07610 abrB 1476628..1476906 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB3Y92_RS07615 - 1477049..1478359 (+) 1311 WP_180309068.1 ATP-binding protein -
  AB3Y92_RS07620 - 1478364..1479200 (+) 837 WP_058014089.1 gamma-glutamylcyclotransferase -
  AB3Y92_RS07625 - 1479238..1479906 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  AB3Y92_RS07630 ade 1480168..1481898 (+) 1731 WP_058014088.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=1165905 AB3Y92_RS07610 WP_012009813.1 1476628..1476906(+) (abrB) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1165905 AB3Y92_RS07610 WP_012009813.1 1476628..1476906(+) (abrB) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
TTACTGTTAAAAGAACTTCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment