Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB3Y92_RS07385 Genome accession   NZ_OZ061327
Coordinates   1438258..1438719 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433258..1443719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS07360 - 1433866..1434750 (+) 885 WP_058014125.1 cation diffusion facilitator family transporter -
  AB3Y92_RS07365 - 1434813..1434965 (-) 153 WP_200964039.1 hypothetical protein -
  AB3Y92_RS07370 - 1435267..1435806 (+) 540 WP_058014124.1 RDD family protein -
  AB3Y92_RS07375 - 1435932..1437242 (+) 1311 WP_058014123.1 MFS transporter -
  AB3Y92_RS07380 - 1437316..1438224 (+) 909 WP_012009773.1 chemotaxis protein -
  AB3Y92_RS07385 kre 1438258..1438719 (-) 462 WP_012009774.1 YkyB family protein Regulator
  AB3Y92_RS07390 - 1439229..1439444 (-) 216 WP_012009775.1 hypothetical protein -
  AB3Y92_RS07395 - 1439853..1441130 (-) 1278 WP_058014121.1 MFS transporter -
  AB3Y92_RS07400 - 1441204..1441701 (-) 498 WP_058014120.1 L,D-transpeptidase family protein -
  AB3Y92_RS07405 - 1441858..1442715 (-) 858 WP_058014119.1 metallophosphoesterase -
  AB3Y92_RS07410 fadH 1442853..1443617 (+) 765 WP_058014118.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=1165903 AB3Y92_RS07385 WP_012009774.1 1438258..1438719(-) (kre) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1165903 AB3Y92_RS07385 WP_012009774.1 1438258..1438719(-) (kre) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAGCTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment