Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   AB3Y92_RS05845 Genome accession   NZ_OZ061327
Coordinates   1173189..1174151 (+) Length   320 a.a.
NCBI ID   WP_058014312.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168189..1179151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS05815 argF 1168518..1169468 (+) 951 WP_058014316.1 ornithine carbamoyltransferase -
  AB3Y92_RS05820 - 1169571..1169750 (+) 180 WP_003211282.1 YjzC family protein -
  AB3Y92_RS05825 - 1169920..1171185 (+) 1266 WP_058014315.1 MFS transporter -
  AB3Y92_RS05830 - 1171301..1171495 (-) 195 WP_003211779.1 YjzD family protein -
  AB3Y92_RS05835 - 1171707..1172447 (+) 741 WP_058014314.1 hypothetical protein -
  AB3Y92_RS05840 - 1172523..1173098 (+) 576 WP_058014313.1 hypothetical protein -
  AB3Y92_RS05845 med 1173189..1174151 (+) 963 WP_058014312.1 BMP family ABC transporter substrate-binding protein Regulator
  AB3Y92_RS05850 comZ 1174162..1174359 (+) 198 WP_058014495.1 ComZ family protein Regulator
  AB3Y92_RS05855 - 1174370..1174603 (-) 234 WP_058014311.1 hypothetical protein -
  AB3Y92_RS05860 - 1174773..1175711 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  AB3Y92_RS05865 fabF 1175733..1176974 (+) 1242 WP_058014310.1 beta-ketoacyl-ACP synthase II -
  AB3Y92_RS05870 - 1177052..1177855 (+) 804 WP_058014309.1 DUF2268 domain-containing protein -
  AB3Y92_RS05875 - 1178016..1178996 (+) 981 WP_058014308.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35619.54 Da        Isoelectric Point: 5.4531

>NTDB_id=1165895 AB3Y92_RS05845 WP_058014312.1 1173189..1174151(+) (med) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKYQRLVMIFSFLLLLSACSQAPLKGQIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAIE
EFHKKGVNLIIGHGNEYSEIFNLISEDYPKTQFITVNGNKPQADNVANVTFKGEAMGFFGGMTAAHMSKSKKIGILATYD
WQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVELYQKLKKQGVDVVYPAGDGYNIPVIEQIKADNLSAIGYVTDQS
NLGSHTVLTSTVQHVDKAYGIIAKKFNEGKLNAQGEYSFDFKEGVIEMGKFSSTIDRAFLKDIESDIATYKKTGKLPNEK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1165895 AB3Y92_RS05845 WP_058014312.1 1173189..1174151(+) (med) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAAGTATCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTCCTATTATCTGCCTGCTCACAGGCACCTTTAAAAGGACA
GATTGAGAAGGTGGGTTTACTCGTCCCCGATACTATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTATTAA
ATATTCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGAATGGTCGACAAAGAGAAAATCGTTGATGCCATTGAA
GAATTTCACAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAATGAATACAGCGAAATTTTCAATTTAATCAGTGAAGA
TTATCCGAAAACACAATTTATCACGGTAAATGGAAACAAGCCTCAGGCGGATAATGTTGCGAATGTGACGTTTAAAGGTG
AAGCGATGGGCTTTTTCGGAGGCATGACAGCAGCACATATGTCAAAATCAAAAAAGATTGGTATTCTTGCTACATATGAT
TGGCAAAGCGAAGTAGACGGCTTTATCAAAGGTGCAAAATATCAAGATGAACATGTACAAGTGCTTGCTGAGTTTGTCGA
AAACTGGGATGATGCGGACAAAGCCGTGGAGCTCTATCAAAAATTGAAAAAACAAGGCGTAGATGTTGTATATCCAGCAG
GTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAGCCGATAATTTATCTGCGATCGGATATGTCACCGATCAATCC
AACCTCGGCAGCCATACCGTTTTAACAAGCACAGTCCAGCATGTGGATAAAGCGTACGGTATTATTGCGAAGAAATTTAA
TGAAGGCAAGCTAAATGCACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGTTCTA
CCATTGACCGTGCTTTTTTGAAAGACATTGAAAGTGATATTGCGACTTACAAAAAAACTGGCAAACTGCCAAATGAAAAG
TGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

63.898

97.813

0.625

Multiple sequence alignment