Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB3Y92_RS01940 Genome accession   NZ_OZ061327
Coordinates   361100..361528 (-) Length   142 a.a.
NCBI ID   WP_268467741.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356100..366528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS01910 - 356254..356583 (+) 330 WP_058015304.1 YckD family protein -
  AB3Y92_RS01915 - 356634..357398 (-) 765 WP_058015283.1 MBL fold metallo-hydrolase -
  AB3Y92_RS01920 - 357514..357930 (+) 417 WP_058015284.1 Lrp/AsnC family transcriptional regulator -
  AB3Y92_RS01925 - 357960..358766 (+) 807 WP_058015285.1 aminoglycoside N(3)-acetyltransferase -
  AB3Y92_RS01930 - 358768..359154 (-) 387 WP_058015286.1 competence protein ComJ -
  AB3Y92_RS01935 - 359275..360972 (-) 1698 WP_058015287.1 methyl-accepting chemotaxis protein -
  AB3Y92_RS01940 nucA/comI 361100..361528 (-) 429 WP_268467741.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB3Y92_RS01945 - 361896..363965 (+) 2070 WP_058015289.1 hydantoinase/oxoprolinase family protein -
  AB3Y92_RS01950 - 363955..365940 (+) 1986 WP_058015290.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15879.80 Da        Isoelectric Point: 5.8519

>NTDB_id=1165886 AB3Y92_RS01940 WP_268467741.1 361100..361528(-) (nucA/comI) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKLLKIILLLLLIIVGVATGYVQLEHGKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1165886 AB3Y92_RS01940 WP_268467741.1 361100..361528(-) (nucA/comI) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCATCGTTGGTGTAGCAACAGGCTATGTTCAGCTGGAGCACGG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTACCCCGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACAATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGATATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATACATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCAGATGATCCTGACG
GCACAAGAATACAATTTATCATAGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

74.528

74.648

0.556

Multiple sequence alignment