Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB3Y92_RS00255 Genome accession   NZ_OZ061327
Coordinates   47037..47327 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42037..52327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS00215 - 42072..42401 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  AB3Y92_RS00220 - 42414..42854 (+) 441 WP_058015827.1 YaaR family protein -
  AB3Y92_RS00225 holB 42866..43855 (+) 990 WP_058015828.1 DNA polymerase III subunit delta' -
  AB3Y92_RS00230 - 43858..44685 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  AB3Y92_RS00235 yabA 44700..45053 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  AB3Y92_RS00240 - 45109..45852 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB3Y92_RS00245 - 45839..46135 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  AB3Y92_RS00250 rsmI 46113..46991 (+) 879 WP_268467823.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB3Y92_RS00255 abrB 47037..47327 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB3Y92_RS00260 metG 47846..49846 (+) 2001 WP_058015832.1 methionine--tRNA ligase -
  AB3Y92_RS00265 - 49928..50695 (+) 768 WP_268467826.1 TatD family hydrolase -
  AB3Y92_RS00270 - 50940..52142 (+) 1203 WP_058015834.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=1165883 AB3Y92_RS00255 WP_087975202.1 47037..47327(-) (abrB) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1165883 AB3Y92_RS00255 WP_087975202.1 47037..47327(-) (abrB) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment