Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AB3Y92_RS00020 Genome accession   NZ_OZ061327
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_058013177.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS00005 dnaA 1..1341 (+) 1341 WP_058013178.1 chromosomal replication initiator protein DnaA -
  AB3Y92_RS00010 dnaN 1538..2674 (+) 1137 WP_041815072.1 DNA polymerase III subunit beta -
  AB3Y92_RS00015 yaaA 2825..3040 (+) 216 WP_041815077.1 S4 domain-containing protein YaaA -
  AB3Y92_RS00020 recF 3057..4169 (+) 1113 WP_058013177.1 DNA replication/repair protein RecF Machinery gene
  AB3Y92_RS00025 remB 4187..4432 (+) 246 WP_041815080.1 extracellular matrix regulator RemB -
  AB3Y92_RS00030 gyrB 4490..6406 (+) 1917 WP_058013868.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB3Y92_RS00035 gyrA 6635..9136 (+) 2502 WP_058013176.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42573.62 Da        Isoelectric Point: 7.3663

>NTDB_id=1165881 AB3Y92_RS00020 WP_058013177.1 3057..4169(+) (recF) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRRQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1165881 AB3Y92_RS00020 WP_058013177.1 3057..4169(+) (recF) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCAATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCCAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCATTACTTGAAACAACTGCAGACAAGAAGGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCAGCTGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGTTGCATTTTGGCA
TATCTAGAGAGCTAGAAACACTCACGCTCCAATACCAAACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGTTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAGGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAAATTGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment