Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Y97_RS06300 Genome accession   NZ_OZ061310
Coordinates   1260172..1261959 (-) Length   595 a.a.
NCBI ID   WP_367301056.1    Uniprot ID   -
Organism   Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255172..1266959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y97_RS06270 - 1255300..1255683 (-) 384 WP_014974767.1 VOC family protein -
  AB3Y97_RS06275 - 1255757..1256485 (-) 729 WP_367301052.1 fructose permease -
  AB3Y97_RS06280 - 1256490..1257506 (-) 1017 WP_014974769.1 zinc-dependent alcohol dehydrogenase family protein -
  AB3Y97_RS06285 - 1257689..1258657 (+) 969 WP_367301053.1 LacI family DNA-binding transcriptional regulator -
  AB3Y97_RS06290 - 1258726..1259643 (-) 918 WP_367301054.1 phosphoglycerate dehydrogenase -
  AB3Y97_RS06295 - 1259696..1260097 (-) 402 WP_367301055.1 cytidine deaminase -
  AB3Y97_RS06300 pepF 1260172..1261959 (-) 1788 WP_367301056.1 oligoendopeptidase F Regulator
  AB3Y97_RS06305 - 1262030..1263061 (-) 1032 WP_367301057.1 competence protein CoiA -
  AB3Y97_RS06310 - 1263110..1264543 (-) 1434 WP_367301058.1 ABC transporter substrate-binding protein/permease -
  AB3Y97_RS06315 - 1264652..1265404 (-) 753 WP_135197733.1 amino acid ABC transporter ATP-binding protein -
  AB3Y97_RS06320 - 1265401..1266843 (-) 1443 WP_135197734.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67684.51 Da        Isoelectric Point: 4.6327

>NTDB_id=1165770 AB3Y97_RS06300 WP_367301056.1 1260172..1261959(-) (pepF) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
MAQPLRNEVPKSLTWDLTTIFSTDEAWQAAFEKIQNDTQKVRQFAGHVGDSAETVQAALEANLALERQLESVHVYANQIY
DQDTTNQKYAAFYARVQGLWATVSEATAYFQPEVLNIPDADLATYLTTDGLKKYAHLFETLKAQKPYTLPADQEALLAGA
SDIFNASENTFGALDNSDIIFGDVHTESGEIVPLTNGLYSLLLESKNRALRQEAFETLYDSYIALQNTFASTLSSHVKGH
NFLARTRHYQSAREAAILPHQVPTTVFQTLIKTVDEHLPLLHRFVSLRKKILNVEDVHSYDLYVPLVDEIDFEVTYEKAK
DIVLAALAPLGEDYLAIVQKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSIHSYLTRH
NQPYYYGDYPIFLAEIASTTNESLLTDYLLKNNDDPKFQAYILNQYLDGFKGTVFRQTQFAEFENWIHEQSAQGEALTAD
KMSTYYGNLNQKYYGNDLFPDEEIAFEWSRIPHFYYNFYVYQYATGEAAATTLAERILNQNGAEAYKNYLKAGSSDYPLN
VIAKAGVDMSQADYLNQAFGVFEERLNQLEMLLKK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1165770 AB3Y97_RS06300 WP_367301056.1 1260172..1261959(-) (pepF) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
ATGGCACAACCATTACGTAATGAAGTACCAAAATCTCTGACATGGGATCTCACAACGATTTTTTCGACCGACGAAGCTTG
GCAAGCAGCTTTTGAAAAAATACAAAATGATACTCAGAAAGTTCGCCAATTTGCTGGACATGTTGGTGATTCAGCAGAAA
CAGTACAAGCAGCTTTAGAAGCGAATCTAGCATTAGAACGTCAACTCGAGAGCGTACATGTTTATGCCAATCAAATTTAT
GACCAAGATACGACTAATCAAAAGTATGCGGCTTTTTATGCCCGTGTACAAGGATTATGGGCAACAGTCAGTGAAGCAAC
AGCTTATTTTCAACCAGAAGTGTTGAATATTCCTGATGCGGATTTGGCAACATATTTAACGACCGACGGCTTAAAAAAGT
ATGCACATTTATTTGAGACACTAAAAGCACAAAAGCCATACACATTACCGGCAGATCAAGAAGCACTTCTAGCAGGTGCG
AGTGACATTTTTAATGCTTCTGAAAATACTTTTGGTGCATTGGATAATTCTGATATAATATTTGGCGATGTTCACACTGA
ATCAGGGGAAATTGTACCACTAACTAATGGTTTGTACAGTTTATTATTGGAATCAAAGAATCGAGCTCTGCGACAAGAGG
CTTTTGAAACATTGTATGATAGCTATATAGCCTTACAAAACACATTCGCTTCAACGCTTTCATCACACGTTAAGGGACAT
AACTTTTTAGCTCGAACGCGCCATTACCAATCAGCGCGTGAAGCAGCTATTTTACCACATCAGGTGCCAACAACTGTTTT
TCAAACATTAATTAAGACAGTGGATGAACATTTACCGTTATTACATCGTTTTGTATCTTTACGTAAAAAGATTTTAAATG
TTGAAGATGTACATTCTTATGATTTATATGTGCCACTAGTAGATGAAATAGATTTTGAAGTGACATACGAAAAAGCAAAA
GATATTGTTCTGGCAGCGTTAGCGCCATTGGGTGAAGATTATCTAGCCATTGTTCAAAAAGCTTTTGATGAACGATGGAT
TGATGTTGTTGAAAACAAAGGTAAACGGACAGGAGCCTATTCGAGTGGCACATATGATACGAATCCCTTTATTTTATTGA
ACTGGCAAAATAATCTGAATAATGTTTACACATTAGCTCATGAAATGGGTCATTCTATTCATTCTTATCTAACGCGACAT
AATCAACCTTATTACTATGGTGACTATCCAATTTTCTTAGCTGAAATTGCGTCAACAACCAATGAGTCATTACTCACAGA
CTACTTATTGAAAAATAATGATGATCCAAAGTTTCAAGCATATATCCTCAATCAATATTTGGATGGCTTTAAGGGAACGG
TATTTCGTCAAACACAGTTTGCGGAGTTTGAGAATTGGATTCACGAACAAAGTGCTCAGGGTGAAGCTTTAACTGCTGAT
AAAATGAGTACTTATTATGGCAATCTTAATCAGAAGTATTACGGCAATGATCTATTTCCTGATGAAGAAATCGCGTTTGA
ATGGTCGCGCATCCCGCATTTTTATTACAATTTCTATGTTTATCAATATGCCACTGGTGAGGCTGCAGCAACGACTTTAG
CTGAACGTATTCTAAATCAAAATGGTGCAGAAGCTTACAAAAACTATTTGAAAGCCGGTTCATCAGATTATCCTTTGAAT
GTGATTGCGAAAGCAGGTGTTGATATGAGCCAAGCTGATTACTTAAATCAAGCTTTTGGTGTATTTGAAGAACGCTTAAA
CCAGTTAGAAATGTTATTAAAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.277

99.664

0.521

Multiple sequence alignment