Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | AB3217_RS04505 | Genome accession | NZ_OZ061292 |
| Coordinates | 918385..920187 (+) | Length | 600 a.a. |
| NCBI ID | WP_367365724.1 | Uniprot ID | - |
| Organism | Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Genomic Context
Location: 913385..925187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3217_RS04480 | - | 914166..914675 (-) | 510 | WP_057784611.1 | hypothetical protein | - |
| AB3217_RS04485 | - | 914824..915564 (+) | 741 | WP_057784612.1 | MBL fold metallo-hydrolase | - |
| AB3217_RS04490 | spxA | 915896..916294 (+) | 399 | WP_057784613.1 | transcriptional regulator SpxA | - |
| AB3217_RS04495 | - | 916419..917132 (+) | 714 | WP_367365723.1 | adaptor protein MecA | - |
| AB3217_RS04500 | - | 917234..918343 (+) | 1110 | WP_260274558.1 | competence protein CoiA | - |
| AB3217_RS04505 | pepF | 918385..920187 (+) | 1803 | WP_367365724.1 | oligoendopeptidase F | Regulator |
| AB3217_RS04510 | - | 920269..920883 (-) | 615 | WP_057784617.1 | DsbA family protein | - |
| AB3217_RS04515 | - | 921159..921809 (+) | 651 | WP_057784618.1 | GTP pyrophosphokinase family protein | - |
| AB3217_RS04520 | - | 921815..922621 (+) | 807 | WP_057784619.1 | NAD kinase | - |
| AB3217_RS04525 | - | 922611..923516 (+) | 906 | WP_068805433.1 | RluA family pseudouridine synthase | - |
| AB3217_RS04530 | mgtE | 923535..924887 (+) | 1353 | WP_057784621.1 | magnesium transporter | - |
Sequence
Protein
Download Length: 600 a.a. Molecular weight: 68567.09 Da Isoelectric Point: 5.2734
>NTDB_id=1165740 AB3217_RS04505 WP_367365724.1 918385..920187(+) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646]
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKVSAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFDSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLENLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKVSAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFDSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLENLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL
Nucleotide
Download Length: 1803 bp
>NTDB_id=1165740 AB3217_RS04505 WP_367365724.1 918385..920187(+) (pepF) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646]
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGT
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGCTCCATTTTTGATTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATTCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGAAAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGT
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGCTCCATTTTTGATTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATTCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGAAAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
50.592 |
98.5 |
0.498 |