Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3Y84_RS10920 Genome accession   NZ_OZ061291
Coordinates   2205261..2206622 (-) Length   453 a.a.
NCBI ID   WP_003130563.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2200261..2211622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS10885 - 2200808..2201302 (+) 495 WP_012898594.1 GNAT family N-acetyltransferase -
  AB3Y84_RS10890 - 2201394..2201717 (-) 324 WP_225509979.1 DUF1048 domain-containing protein -
  AB3Y84_RS10895 - 2201704..2202051 (-) 348 WP_098384252.1 DUF1048 domain-containing protein -
  AB3Y84_RS10900 - 2202038..2202400 (-) 363 WP_003129889.1 PadR family transcriptional regulator -
  AB3Y84_RS10905 - 2202521..2203150 (-) 630 WP_367294004.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB3Y84_RS10910 - 2203215..2204300 (-) 1086 WP_012898597.1 PIN/TRAM domain-containing protein -
  AB3Y84_RS10915 - 2204531..2205217 (+) 687 WP_058203718.1 YoaK family protein -
  AB3Y84_RS10920 radA 2205261..2206622 (-) 1362 WP_003130563.1 DNA repair protein RadA Machinery gene
  AB3Y84_RS10925 - 2206784..2207011 (-) 228 WP_010906294.1 heavy-metal-associated domain-containing protein -
  AB3Y84_RS10935 rplQ 2207826..2208206 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  AB3Y84_RS10940 - 2208225..2209163 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  AB3Y84_RS10945 rpsK 2209211..2209594 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  AB3Y84_RS10950 rpsM 2209615..2209980 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  AB3Y84_RS10955 rpmJ 2209998..2210114 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  AB3Y84_RS10960 infA 2210168..2210386 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  AB3Y84_RS10965 - 2210683..2211330 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49893.28 Da        Isoelectric Point: 5.1748

>NTDB_id=1165716 AB3Y84_RS10920 WP_003130563.1 2205261..2206622(-) (radA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1165716 AB3Y84_RS10920 WP_003130563.1 2205261..2206622(-) (radA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACCTAGATGAATTTAATCGTGTA
TTAGGAGGGGGCGTCGTTCCTGGTTCATTAGTTCTGATTGGGGGAGACCCTGGGATAGGTAAATCAACTTTACTTTTACA
GGTTTCTACTCAATTGGCTTCTAGAGGTCGTGTGCTGTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATCATGACACCAGAAATTCAATCAACTCAAGGCTCTGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACTTTTATTGTTGGTCATG
TGACTAAAGAAGGACAGCTGGCTGGTCCAAGGATGTTGGAGCACATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCTTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGCTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAGGGAACACGGCCTATACTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAAAAGAGAACGGGGCTTTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTAAATGAAGCTGCAAAACTAGGTTTTAAAAAAGTATATGCTCCTAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment