Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | AB3234_RS04735 | Genome accession | NZ_OZ061257 |
| Coordinates | 1027702..1029519 (+) | Length | 605 a.a. |
| NCBI ID | WP_164511534.1 | Uniprot ID | - |
| Organism | Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1017039..1074166 | 1027702..1029519 | within | 0 |
Gene organization within MGE regions
Location: 1017039..1074166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3234_RS04690 | - | 1018799..1019776 (+) | 978 | WP_125581781.1 | 3'-5' exoribonuclease YhaM family protein | - |
| AB3234_RS04695 | - | 1019916..1020842 (-) | 927 | WP_125581783.1 | peptidylprolyl isomerase PrsA | - |
| AB3234_RS04700 | - | 1020955..1021275 (-) | 321 | WP_125581785.1 | hypothetical protein | - |
| AB3234_RS04705 | - | 1021278..1021736 (-) | 459 | WP_191983301.1 | HIT family protein | - |
| AB3234_RS04710 | - | 1022881..1023615 (+) | 735 | WP_125581787.1 | ABC transporter ATP-binding protein | - |
| AB3234_RS04715 | - | 1023612..1024838 (+) | 1227 | WP_367377024.1 | ABC transporter permease | - |
| AB3234_RS04720 | - | 1024900..1025691 (+) | 792 | WP_125581791.1 | phosphotransferase family protein | - |
| AB3234_RS04725 | trmB | 1025757..1026404 (+) | 648 | WP_125581793.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| AB3234_RS04730 | - | 1026551..1027645 (+) | 1095 | WP_125581795.1 | competence protein CoiA | - |
| AB3234_RS04735 | pepF | 1027702..1029519 (+) | 1818 | WP_164511534.1 | oligoendopeptidase F | Regulator |
| AB3234_RS04740 | - | 1029893..1030753 (-) | 861 | WP_125581799.1 | DegV family protein | - |
| AB3234_RS04745 | - | 1031116..1031766 (-) | 651 | WP_125581801.1 | DsbA family protein | - |
| AB3234_RS04750 | - | 1032124..1032780 (+) | 657 | WP_125581803.1 | GTP pyrophosphokinase family protein | - |
| AB3234_RS04755 | - | 1032782..1033585 (+) | 804 | WP_367377025.1 | NAD kinase | - |
| AB3234_RS04760 | - | 1033582..1034481 (+) | 900 | WP_125581807.1 | RluA family pseudouridine synthase | - |
| AB3234_RS04765 | - | 1035338..1037809 (+) | 2472 | WP_367377230.1 | KxYKxGKxW signal peptide domain-containing protein | - |
| AB3234_RS04770 | - | 1037893..1041375 (+) | 3483 | WP_367377026.1 | Ig-like domain-containing protein | - |
| AB3234_RS04775 | - | 1041361..1042239 (-) | 879 | WP_010011610.1 | IS3 family transposase | - |
| AB3234_RS04780 | - | 1042263..1042550 (-) | 288 | WP_003688751.1 | transposase | - |
| AB3234_RS04785 | - | 1042554..1044848 (+) | 2295 | WP_367377027.1 | hypothetical protein | - |
| AB3234_RS04790 | - | 1045462..1047102 (+) | 1641 | WP_125581811.1 | glycosyl transferase family 1 | - |
| AB3234_RS04795 | - | 1047117..1047320 (+) | 204 | WP_125581813.1 | hypothetical protein | - |
| AB3234_RS04800 | asp1 | 1047343..1048860 (+) | 1518 | WP_125581815.1 | accessory Sec system glycosyltransferase Asp1 | - |
| AB3234_RS04805 | - | 1048873..1050405 (+) | 1533 | WP_125581817.1 | glycosyltransferase | - |
| AB3234_RS04810 | - | 1050425..1050820 (+) | 396 | WP_125581819.1 | capsular biosynthesis protein | - |
| AB3234_RS04815 | - | 1050817..1052463 (+) | 1647 | WP_125581821.1 | hypothetical protein | - |
| AB3234_RS04820 | - | 1052475..1053188 (+) | 714 | WP_225419799.1 | glycosyltransferase family 2 protein | - |
| AB3234_RS04825 | - | 1053275..1055128 (+) | 1854 | WP_125581825.1 | hypothetical protein | - |
| AB3234_RS04830 | - | 1055213..1056451 (+) | 1239 | WP_125581827.1 | hypothetical protein | - |
| AB3234_RS04835 | - | 1056505..1057383 (+) | 879 | WP_125581829.1 | hypothetical protein | - |
| AB3234_RS04840 | - | 1057773..1059053 (+) | 1281 | WP_125581831.1 | hypothetical protein | - |
| AB3234_RS04845 | - | 1059131..1059766 (-) | 636 | WP_225419798.1 | copper homeostasis protein CutC | - |
| AB3234_RS04850 | - | 1060248..1061432 (+) | 1185 | WP_125581835.1 | AI-2E family transporter | - |
| AB3234_RS04855 | - | 1061419..1062273 (+) | 855 | WP_125581837.1 | methyltransferase domain-containing protein | - |
| AB3234_RS04860 | - | 1062701..1064341 (+) | 1641 | WP_367377028.1 | DUF5776 domain-containing protein | - |
| AB3234_RS04865 | - | 1064509..1065849 (-) | 1341 | WP_125581843.1 | LPXTG cell wall anchor domain-containing protein | - |
| AB3234_RS04870 | - | 1066234..1066746 (+) | 513 | WP_125581845.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| AB3234_RS04875 | - | 1066765..1069100 (+) | 2336 | Protein_944 | DNA translocase FtsK | - |
| AB3234_RS04880 | - | 1069225..1069587 (+) | 363 | WP_125581849.1 | hypothetical protein | - |
| AB3234_RS04885 | - | 1069911..1070033 (-) | 123 | WP_125577081.1 | DUF4044 domain-containing protein | - |
| AB3234_RS04890 | - | 1070977..1071330 (+) | 354 | WP_125581851.1 | DUF3397 family protein | - |
| AB3234_RS04895 | mraZ | 1071532..1071963 (+) | 432 | WP_125581853.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| AB3234_RS04900 | rsmH | 1071986..1072930 (+) | 945 | WP_125581855.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| AB3234_RS04905 | ftsL | 1072973..1073374 (+) | 402 | WP_125581857.1 | cell division protein FtsL | - |
Sequence
Protein
Download Length: 605 a.a. Molecular weight: 68041.99 Da Isoelectric Point: 5.0948
>NTDB_id=1165662 AB3234_RS04735 WP_164511534.1 1027702..1029519(+) (pepF) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
MRNLKQIPKRSAVPTALTWDLTTIYPDDAAFQEALQAIKTQSDDAAKLKGQLAQSGADLYRVTQANFDLQRQLERAYVYA
SLKNDQDTGNAAAQALMGQAESLLATVGAATSWFEPEVLALEPAALQKLIDAEPKLADYQHYFDVLGKQRAHTLSAQEEK
LLAGASDIFSASSKTYSVLSDADLKFPVVQDEEGNDVRLSEGLYGVLLESTTPAVREQAFKALYSVYQQFRHTFASTLSS
EVKTHNFNAQIRHYGSAREAAMAANNVPAVVYDTLVHTVNDHLGSLHQYVNLRKEILGLPELHMYDLYTPITGEPSLTYT
YEEAQQEALKALNVLGPDYVANVQKMFDSRAIDVVENEGKRTGAYSGGMYDTKPYILLNWQNSLESLFTLVHEMGHSMHS
HYTRTNQSYLYGDYSIFVAEIASTTNENLLTDYLLQTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHRQAAAGE
TLTADFMSKFYGDLNRRYYGDGVVSDPQISDEWTRIPHFYYNYYVYQYSTGFAAATTLSQRVLSGDAAKREAYLNYLKSG
SSDLPLNVMKRAGVDMTQPEYLQTAFKTFDDRLAEFTQLAHDLKK
MRNLKQIPKRSAVPTALTWDLTTIYPDDAAFQEALQAIKTQSDDAAKLKGQLAQSGADLYRVTQANFDLQRQLERAYVYA
SLKNDQDTGNAAAQALMGQAESLLATVGAATSWFEPEVLALEPAALQKLIDAEPKLADYQHYFDVLGKQRAHTLSAQEEK
LLAGASDIFSASSKTYSVLSDADLKFPVVQDEEGNDVRLSEGLYGVLLESTTPAVREQAFKALYSVYQQFRHTFASTLSS
EVKTHNFNAQIRHYGSAREAAMAANNVPAVVYDTLVHTVNDHLGSLHQYVNLRKEILGLPELHMYDLYTPITGEPSLTYT
YEEAQQEALKALNVLGPDYVANVQKMFDSRAIDVVENEGKRTGAYSGGMYDTKPYILLNWQNSLESLFTLVHEMGHSMHS
HYTRTNQSYLYGDYSIFVAEIASTTNENLLTDYLLQTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHRQAAAGE
TLTADFMSKFYGDLNRRYYGDGVVSDPQISDEWTRIPHFYYNYYVYQYSTGFAAATTLSQRVLSGDAAKREAYLNYLKSG
SSDLPLNVMKRAGVDMTQPEYLQTAFKTFDDRLAEFTQLAHDLKK
Nucleotide
Download Length: 1818 bp
>NTDB_id=1165662 AB3234_RS04735 WP_164511534.1 1027702..1029519(+) (pepF) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
ATGAGAAATTTGAAACAAATTCCCAAGCGTTCTGCGGTACCCACGGCTTTGACCTGGGACCTGACCACCATTTATCCTGA
TGATGCGGCCTTCCAAGAGGCGCTGCAAGCCATTAAAACCCAATCCGATGATGCGGCGAAGTTAAAGGGCCAATTAGCCC
AAAGCGGCGCCGACCTTTACCGGGTTACCCAGGCCAACTTTGACCTGCAACGGCAACTGGAACGGGCCTACGTGTACGCC
TCCCTGAAAAATGATCAGGACACGGGTAACGCCGCGGCACAAGCACTGATGGGGCAGGCTGAAAGCCTCCTGGCGACAGT
GGGCGCTGCCACTTCTTGGTTCGAGCCAGAAGTCTTAGCATTAGAGCCAGCTGCGCTACAGAAATTAATCGACGCTGAAC
CCAAGTTGGCCGACTACCAGCACTACTTTGACGTGCTGGGCAAGCAACGGGCCCACACCTTGTCCGCCCAGGAGGAAAAA
TTGTTGGCTGGCGCAAGCGACATTTTTTCAGCGTCTTCCAAGACATACAGCGTCCTGAGTGATGCCGACTTGAAGTTCCC
AGTTGTACAAGACGAGGAAGGCAACGACGTTCGGCTCTCCGAAGGGCTGTATGGCGTGTTGCTGGAGTCAACCACCCCAG
CCGTCCGTGAGCAGGCATTTAAAGCCCTCTACAGCGTTTATCAACAATTCCGTCATACCTTTGCATCAACACTGTCAAGT
GAGGTTAAAACGCATAATTTTAACGCTCAGATCCGTCATTATGGAAGTGCTCGGGAAGCGGCGATGGCTGCCAACAATGT
GCCAGCAGTGGTTTATGATACGCTGGTGCACACGGTCAATGATCATCTCGGCTCACTCCACCAATACGTGAACCTGCGGA
AGGAAATTCTGGGATTGCCCGAATTGCACATGTACGACCTGTACACGCCGATCACCGGTGAACCTAGCCTGACTTACACC
TACGAAGAGGCCCAACAGGAGGCGCTGAAGGCGCTGAACGTGCTCGGTCCCGATTACGTGGCTAACGTGCAGAAAATGTT
TGATAGCCGGGCCATTGACGTCGTGGAAAACGAAGGCAAGCGGACTGGTGCCTATTCAGGGGGGATGTACGACACCAAGC
CGTATATCTTACTGAATTGGCAAAATAGTCTGGAGAGCCTGTTCACGCTGGTCCACGAAATGGGTCACAGCATGCACAGT
CACTATACCCGGACGAATCAGTCTTACCTGTACGGTGACTACTCGATCTTCGTGGCAGAAATTGCGTCGACGACCAACGA
AAACCTCTTAACCGATTACCTGTTACAAACGCAGACGGATCCCAAAGTCCGGGCGTACGTGTTGAATCACTACCTGGATG
GCTTCAAGGGGACCGTCTACCGGCAAACGCAATTCGCTGAATTTGAAGATTACATTCACCGTCAAGCCGCTGCCGGGGAA
ACCCTGACCGCTGACTTCATGAGCAAATTCTATGGCGACCTGAACCGGCGTTATTACGGGGATGGCGTGGTCTCTGATCC
ACAAATTTCAGACGAGTGGACCCGGATTCCTCATTTCTACTACAACTACTACGTTTACCAGTATTCGACTGGTTTCGCGG
CCGCGACGACGCTGAGTCAACGCGTGTTGAGTGGGGATGCGGCTAAACGTGAGGCGTATCTGAACTATCTGAAGTCTGGG
AGTTCTGACTTGCCATTGAACGTGATGAAGAGGGCCGGCGTGGACATGACGCAACCGGAATACTTGCAGACGGCGTTCAA
GACGTTTGACGACCGCCTGGCTGAGTTCACCCAGCTCGCCCACGATTTGAAGAAGTAG
ATGAGAAATTTGAAACAAATTCCCAAGCGTTCTGCGGTACCCACGGCTTTGACCTGGGACCTGACCACCATTTATCCTGA
TGATGCGGCCTTCCAAGAGGCGCTGCAAGCCATTAAAACCCAATCCGATGATGCGGCGAAGTTAAAGGGCCAATTAGCCC
AAAGCGGCGCCGACCTTTACCGGGTTACCCAGGCCAACTTTGACCTGCAACGGCAACTGGAACGGGCCTACGTGTACGCC
TCCCTGAAAAATGATCAGGACACGGGTAACGCCGCGGCACAAGCACTGATGGGGCAGGCTGAAAGCCTCCTGGCGACAGT
GGGCGCTGCCACTTCTTGGTTCGAGCCAGAAGTCTTAGCATTAGAGCCAGCTGCGCTACAGAAATTAATCGACGCTGAAC
CCAAGTTGGCCGACTACCAGCACTACTTTGACGTGCTGGGCAAGCAACGGGCCCACACCTTGTCCGCCCAGGAGGAAAAA
TTGTTGGCTGGCGCAAGCGACATTTTTTCAGCGTCTTCCAAGACATACAGCGTCCTGAGTGATGCCGACTTGAAGTTCCC
AGTTGTACAAGACGAGGAAGGCAACGACGTTCGGCTCTCCGAAGGGCTGTATGGCGTGTTGCTGGAGTCAACCACCCCAG
CCGTCCGTGAGCAGGCATTTAAAGCCCTCTACAGCGTTTATCAACAATTCCGTCATACCTTTGCATCAACACTGTCAAGT
GAGGTTAAAACGCATAATTTTAACGCTCAGATCCGTCATTATGGAAGTGCTCGGGAAGCGGCGATGGCTGCCAACAATGT
GCCAGCAGTGGTTTATGATACGCTGGTGCACACGGTCAATGATCATCTCGGCTCACTCCACCAATACGTGAACCTGCGGA
AGGAAATTCTGGGATTGCCCGAATTGCACATGTACGACCTGTACACGCCGATCACCGGTGAACCTAGCCTGACTTACACC
TACGAAGAGGCCCAACAGGAGGCGCTGAAGGCGCTGAACGTGCTCGGTCCCGATTACGTGGCTAACGTGCAGAAAATGTT
TGATAGCCGGGCCATTGACGTCGTGGAAAACGAAGGCAAGCGGACTGGTGCCTATTCAGGGGGGATGTACGACACCAAGC
CGTATATCTTACTGAATTGGCAAAATAGTCTGGAGAGCCTGTTCACGCTGGTCCACGAAATGGGTCACAGCATGCACAGT
CACTATACCCGGACGAATCAGTCTTACCTGTACGGTGACTACTCGATCTTCGTGGCAGAAATTGCGTCGACGACCAACGA
AAACCTCTTAACCGATTACCTGTTACAAACGCAGACGGATCCCAAAGTCCGGGCGTACGTGTTGAATCACTACCTGGATG
GCTTCAAGGGGACCGTCTACCGGCAAACGCAATTCGCTGAATTTGAAGATTACATTCACCGTCAAGCCGCTGCCGGGGAA
ACCCTGACCGCTGACTTCATGAGCAAATTCTATGGCGACCTGAACCGGCGTTATTACGGGGATGGCGTGGTCTCTGATCC
ACAAATTTCAGACGAGTGGACCCGGATTCCTCATTTCTACTACAACTACTACGTTTACCAGTATTCGACTGGTTTCGCGG
CCGCGACGACGCTGAGTCAACGCGTGTTGAGTGGGGATGCGGCTAAACGTGAGGCGTATCTGAACTATCTGAAGTCTGGG
AGTTCTGACTTGCCATTGAACGTGATGAAGAGGGCCGGCGTGGACATGACGCAACCGGAATACTTGCAGACGGCGTTCAA
GACGTTTGACGACCGCCTGGCTGAGTTCACCCAGCTCGCCCACGATTTGAAGAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
50.423 |
97.686 |
0.493 |