Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB3Z01_RS01010 Genome accession   NZ_OZ061254
Coordinates   212534..214285 (+) Length   583 a.a.
NCBI ID   WP_084998142.1    Uniprot ID   -
Organism   Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 199821..214285 212534..214285 within 0


Gene organization within MGE regions


Location: 199821..214285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z01_RS00965 - 200557..203340 (-) 2784 WP_085012880.1 DEAD/DEAH box helicase -
  AB3Z01_RS00970 - 203681..204268 (+) 588 WP_085012879.1 hypothetical protein -
  AB3Z01_RS00975 - 204626..205138 (+) 513 WP_085012878.1 helix-turn-helix domain-containing protein -
  AB3Z01_RS00980 - 205565..206653 (+) 1089 WP_085012877.1 ABC transporter ATP-binding protein -
  AB3Z01_RS00985 - 206646..207608 (+) 963 WP_085012876.1 carbohydrate ABC transporter permease -
  AB3Z01_RS00990 - 207608..208438 (+) 831 WP_057909630.1 carbohydrate ABC transporter permease -
  AB3Z01_RS00995 - 208435..209799 (+) 1365 WP_084998148.1 ABC transporter substrate-binding protein -
  AB3Z01_RS01000 - 209875..210570 (+) 696 WP_084998146.1 glycerophosphodiester phosphodiesterase family protein -
  AB3Z01_RS01005 rcrP 210771..212534 (+) 1764 WP_084998144.1 ABC transporter ATP-binding protein Regulator
  AB3Z01_RS01010 rcrQ 212534..214285 (+) 1752 WP_084998142.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64704.37 Da        Isoelectric Point: 6.8444

>NTDB_id=1165636 AB3Z01_RS01010 WP_084998142.1 212534..214285(+) (rcrQ) [Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637]
MTKQTNLIPGIKKYGRPYISQVIIAVFLAAFGNIATIVGPNQLSKITNLISKGLRGSIDVSQVMRIVVILGIIYGVGALM
SYGQGFLMANVSQNFTRDLRTKISQKINRLPISYYDKHDEGDTLSRVTNDLDTFGQALNQSLGTLISSIVLIVGTILMMT
VTNWILSLTAIVSAFIGIVLTVVLLQHSQKYFNQQQNNLADVSGYVEEVYSGHQVVKTYNGTKNAKKEFTDRNQKLATSV
WKSQFISGIMQPLMTFIGNLSYVSVSVIGALLVLNNTISIGVVVAFMVYVRIFTQPLSQVTQAFSSLQSAKAALHRVFEF
LEEPDDQADQDADTELKDVKGRIDFEHVSFGYNHNETIIKDFNAHIEPGEKVAIVGPTGSGKTTLISLLMGFYQIDEGSI
KIDNKNINTITKQSIRDQFDMVLQDAWLFEDTIMNNLKYNDPKIDDDQVIEAAKAVGIDHFIRTLPKGYDTVLNDSVTLS
VGQKQLMTIARALVRNRPMLILDEATSSVDTRTEEQLQKAMDILTKGRTSLVIAHRLSTIKNADKIIVLKDGKILETGNH
QELMNENGFYASLYNSQFESLTA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=1165636 AB3Z01_RS01010 WP_084998142.1 212534..214285(+) (rcrQ) [Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637]
ATGACAAAACAAACGAATTTAATTCCCGGTATCAAAAAATATGGTAGACCTTATATTTCTCAAGTAATTATTGCTGTTTT
CCTTGCGGCATTCGGTAATATTGCGACAATTGTGGGTCCTAATCAACTAAGTAAAATTACGAACTTAATTTCCAAGGGGC
TTCGGGGGAGCATTGATGTCAGCCAGGTTATGAGAATTGTGGTAATTTTAGGGATCATCTATGGCGTCGGCGCACTGATG
TCTTACGGACAAGGGTTTTTGATGGCAAATGTTTCGCAGAATTTCACCCGAGATTTAAGAACTAAGATTAGTCAGAAGAT
TAATCGTTTACCGATTTCCTATTATGACAAGCACGATGAGGGTGACACCTTAAGTCGGGTTACCAATGACTTGGATACTT
TTGGTCAGGCCCTCAACCAAAGCTTAGGAACACTCATATCATCTATTGTGTTGATTGTTGGAACGATTCTCATGATGACG
GTCACTAACTGGATCTTGAGTCTCACGGCAATTGTGTCCGCCTTTATCGGAATTGTTCTAACCGTTGTTCTTCTTCAGCA
CTCTCAAAAGTATTTTAACCAGCAACAGAACAATCTCGCTGACGTATCGGGTTATGTTGAAGAAGTTTATTCCGGCCATC
AGGTGGTCAAAACTTATAATGGAACTAAAAATGCTAAGAAAGAATTTACAGACCGCAACCAGAAATTGGCAACCAGCGTT
TGGAAATCTCAATTCATTTCCGGAATTATGCAGCCATTGATGACATTTATCGGGAATTTAAGTTACGTTTCCGTGAGTGT
AATTGGCGCTTTGCTGGTGTTAAACAATACAATTTCAATCGGCGTAGTTGTCGCTTTCATGGTATATGTTAGAATTTTCA
CACAACCACTTTCTCAAGTCACTCAAGCATTTTCCAGCCTTCAGTCAGCTAAAGCTGCATTGCACCGAGTCTTTGAGTTT
CTCGAAGAACCGGATGATCAAGCTGACCAGGATGCAGACACTGAATTAAAGGATGTCAAAGGCCGGATTGATTTCGAACA
CGTTTCTTTTGGTTATAATCATAATGAAACAATTATTAAGGACTTTAATGCCCATATCGAACCTGGCGAAAAAGTAGCCA
TTGTTGGCCCAACAGGTTCAGGAAAGACGACGTTAATTAGTTTATTAATGGGCTTTTATCAAATTGACGAAGGCTCGATT
AAGATTGATAATAAAAACATTAACACCATCACAAAGCAAAGCATCCGTGATCAGTTTGATATGGTTCTCCAAGATGCTTG
GCTCTTTGAAGATACCATCATGAACAATTTGAAATATAATGATCCCAAAATTGATGATGACCAAGTAATTGAAGCGGCCA
AAGCGGTTGGTATTGATCATTTTATCCGAACGTTGCCAAAAGGGTACGATACCGTTCTTAATGATTCAGTAACGCTATCA
GTTGGCCAAAAACAGTTAATGACAATTGCAAGAGCGCTTGTTCGAAATCGGCCAATGTTGATTTTGGATGAAGCTACTAG
TTCAGTTGATACTCGAACTGAAGAACAGCTTCAAAAGGCCATGGACATTTTGACCAAAGGACGCACATCGCTGGTAATTG
CCCATCGATTGTCAACAATCAAAAATGCCGACAAAATTATTGTGCTTAAAGATGGTAAAATCTTAGAGACAGGAAATCAT
CAAGAATTGATGAATGAAAATGGCTTCTATGCTAGTCTGTACAACAGTCAATTTGAAAGTCTAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(360-507)

ABC transporter transmembrane region (ABC_membrane)

(22-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.34

98.799

0.537

Multiple sequence alignment